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The map label for this gene is ydfH [H]

Identifier: 78065607

GI number: 78065607

Start: 1066391

End: 1067071

Strand: Reverse

Name: ydfH [H]

Synonym: Bcep18194_A4135

Alternate gene names: 78065607

Gene position: 1067071-1066391 (Counterclockwise)

Preceding gene: 78065611

Following gene: 78065606

Centisome position: 28.89

GC content: 68.14

Gene sequence:

>681_bases
ATGAATGCCCCGACCGATGTCACCCTCGAGCGCCCAGCCGCACCGGCAGGCAGCCTCGCCGACCGCGCGTACACGCTGAT
CCAGCGCGACATCATCACGATGCGCCTGAAGCCCGGCGCCGCCCTCAACGAAGCCGACCTCGTCGCCCGCACCAGCATCG
GCCGCACACCAGTGCACCAGGCCGTGCATCGGCTCGTGCTCGAAGGGCTGCTGTCCGTGATGCCGCGCAAGGGATTGATG
GTGCAGCCGCTGTCGCTCGACGACATCGTCGCGGTGATCGACGTGAGGCGCATCAACGAAGCGCATTGCGCGGAACTCGC
CGCGCGCCATGCGACCCCCGACGATCTCGCGCGCCTGGCCGCGCTGCTCGACGCCGGGCAGGCGTGCGTCGACACGCACA
ACGTCGAAGGCATGATGGAACTCGACCGCGCGTTCCATCAGGCGATCGCCACGGCCGCGCGCAATGCGGTGCTTGCCGAC
ATCCTGCGCGCGCTGCACGAGCGCTCGCTGCGCTTCTGGTTCGTCACGCTGTCCGAACCCCACCATCTCGCCGACGTCCA
GCACGAGCATCGCGAACTGTTCGATCGGCTATCCGCGCGTGACGCCGCCGGCGCGCGCGCGGCCGTCGAAAGCCATATCG
ATTCGTTCCGCTCCACGCTTCTTCAACATCTTCGCCCCTGA

Upstream 100 bases:

>100_bases
GGACACCAGTGATATATCACAATAATATCCAAGCATCGTCCACGCTCCCGATCGCCTGCGCCATGATCGCGCCCCGTCCG
GCCGCCGCGCCGCAACCCGC

Downstream 100 bases:

>100_bases
GCCGCCCATGACCACTTTCACGCCCTTCCCCCCGCTCGCCCAGCTCGCCGCCGACCTCGCCGCCGGCCGGACCACGAGCC
GCGCACTCGTCGATACCGCG

Product: GntR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 226; Mature: 226

Protein sequence:

>226_residues
MNAPTDVTLERPAAPAGSLADRAYTLIQRDIITMRLKPGAALNEADLVARTSIGRTPVHQAVHRLVLEGLLSVMPRKGLM
VQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLAALLDAGQACVDTHNVEGMMELDRAFHQAIATAARNAVLAD
ILRALHERSLRFWFVTLSEPHHLADVQHEHRELFDRLSARDAAGARAAVESHIDSFRSTLLQHLRP

Sequences:

>Translated_226_residues
MNAPTDVTLERPAAPAGSLADRAYTLIQRDIITMRLKPGAALNEADLVARTSIGRTPVHQAVHRLVLEGLLSVMPRKGLM
VQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLAALLDAGQACVDTHNVEGMMELDRAFHQAIATAARNAVLAD
ILRALHERSLRFWFVTLSEPHHLADVQHEHRELFDRLSARDAAGARAAVESHIDSFRSTLLQHLRP
>Mature_226_residues
MNAPTDVTLERPAAPAGSLADRAYTLIQRDIITMRLKPGAALNEADLVARTSIGRTPVHQAVHRLVLEGLLSVMPRKGLM
VQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLAALLDAGQACVDTHNVEGMMELDRAFHQAIATAARNAVLAD
ILRALHERSLRFWFVTLSEPHHLADVQHEHRELFDRLSARDAAGARAAVESHIDSFRSTLLQHLRP

Specific function: Unknown

COG id: COG1802

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=219, Percent_Identity=24.6575342465753, Blast_Score=75, Evalue=5e-15,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 24855; Mature: 24855

Theoretical pI: Translated: 6.85; Mature: 6.85

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNAPTDVTLERPAAPAGSLADRAYTLIQRDIITMRLKPGAALNEADLVARTSIGRTPVHQ
CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCHHHH
AVHRLVLEGLLSVMPRKGLMVQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLA
HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
ALLDAGQACVDTHNVEGMMELDRAFHQAIATAARNAVLADILRALHERSLRFWFVTLSEP
HHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
HHLADVQHEHRELFDRLSARDAAGARAAVESHIDSFRSTLLQHLRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MNAPTDVTLERPAAPAGSLADRAYTLIQRDIITMRLKPGAALNEADLVARTSIGRTPVHQ
CCCCCCCEECCCCCCCCHHHHHHHHHHHHHHHHEEECCCCCCCHHHHHHHHCCCCCHHHH
AVHRLVLEGLLSVMPRKGLMVQPLSLDDIVAVIDVRRINEAHCAELAARHATPDDLARLA
HHHHHHHHHHHHHCCCCCCEECCCCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHHH
ALLDAGQACVDTHNVEGMMELDRAFHQAIATAARNAVLADILRALHERSLRFWFVTLSEP
HHHHCCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCC
HHLADVQHEHRELFDRLSARDAAGARAAVESHIDSFRSTLLQHLRP
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]