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The map label for this gene is nusB

Identifier: 78065528

GI number: 78065528

Start: 979842

End: 980279

Strand: Reverse

Name: nusB

Synonym: Bcep18194_A4056

Alternate gene names: 78065528

Gene position: 980279-979842 (Counterclockwise)

Preceding gene: 78065529

Following gene: 78065527

Centisome position: 26.54

GC content: 67.12

Gene sequence:

>438_bases
ATGAAGAAGAGCGCCCGCCGACAATCGCGCGAGCTGGCGACGCAGGGGCTGTACCAGTGGCTGCTGTCGAACGCGTCCTC
CGGTGAGATCGACGCGCAACTGCGCGGCGCGCTCGGCTACGACAAGGCTGACAAGGAGCTGCTCGAGGCGATCCTGCACG
GCGTGATCCGCGAGCACGCGACGCTCGTCGAAGCGCTGACGCCGTCGCTCGACCGCCCGATCGAGCAGCTGTCGCCGGTC
GAACGCGCCGTGCTGCTGATCGCGACGTTCGAGCTCACGCACCACGTCGAAACGCCGTACCGCGTGATCATCAACGAAGC
TGTCGAACTCGCGAAGACGTTCGGTGGCTCCGACGGCTACAAGTACGTGAACGGCGTGCTCGACAAGCTCGCCGCGAAGC
TGCGCCCCGCCGAAACGCAGGCGCGCCGCAACGGCTGA

Upstream 100 bases:

>100_bases
GCGTCGCCGTCGAGATGGCCAACCTGACGATGGCACTCGACCAGCTCGGCGATGACGACGAGGACGAAGAGGAAGACGAA
GACGACGAAGAGGAGCGCGC

Downstream 100 bases:

>100_bases
ACCCGTTGGTCCGGAACGGGCGCGCATGCGCCCGTTTTTTCTTTTGCCTCGCCTCCCTCGCCCTGCCCGCCCGATGAATA
CCGCCACCGATTCGCTCGTC

Product: transcription antitermination protein NusB

Products: NA

Alternate protein names: Protein nusB [H]

Number of amino acids: Translated: 145; Mature: 145

Protein sequence:

>145_residues
MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGYDKADKELLEAILHGVIREHATLVEALTPSLDRPIEQLSPV
ERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG

Sequences:

>Translated_145_residues
MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGYDKADKELLEAILHGVIREHATLVEALTPSLDRPIEQLSPV
ERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG
>Mature_145_residues
MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGYDKADKELLEAILHGVIREHATLVEALTPSLDRPIEQLSPV
ERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGSDGYKYVNGVLDKLAAKLRPAETQARRNG

Specific function: Involved in the transcription termination process [H]

COG id: COG0781

COG function: function code K; Transcription termination factor

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nusB family [H]

Homologues:

Organism=Escherichia coli, GI1786618, Length=136, Percent_Identity=44.1176470588235, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: 900 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011605
- InterPro:   IPR006027 [H]

Pfam domain/function: PF01029 NusB [H]

EC number: NA

Molecular weight: Translated: 16050; Mature: 16050

Theoretical pI: Translated: 7.83; Mature: 7.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGYDKADKELLEAILHGVIREHA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TLVEALTPSLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGSDGY
HHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCH
KYVNGVLDKLAAKLRPAETQARRNG
HHHHHHHHHHHHHCCCHHHHHHCCC
>Mature Secondary Structure
MKKSARRQSRELATQGLYQWLLSNASSGEIDAQLRGALGYDKADKELLEAILHGVIREHA
CCCHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHH
TLVEALTPSLDRPIEQLSPVERAVLLIATFELTHHVETPYRVIINEAVELAKTFGGSDGY
HHHHHHCCHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCH
KYVNGVLDKLAAKLRPAETQARRNG
HHHHHHHHHHHHHCCCHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA