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The map label for this gene is yfdE [H]

Identifier: 78065511

GI number: 78065511

Start: 964565

End: 965788

Strand: Direct

Name: yfdE [H]

Synonym: Bcep18194_A4039

Alternate gene names: 78065511

Gene position: 964565-965788 (Clockwise)

Preceding gene: 78065510

Following gene: 78065512

Centisome position: 26.11

GC content: 69.85

Gene sequence:

>1224_bases
ATGCAGGCATTACAAGGAATCAGGGTCGTCGATCTGAGCCGCGCGCTGTCGGGGCCGTTCTGCTCGATGGTGCTCGCCGA
TCTCGGCGCCGACGTGATCAAGGTCGAGTCGGGGCCGCACGGCGACATGAGCCGCGCATGGGGGCCGTTCGATCGCGGCG
TGAGCACGTACTACCTCTCCTGCAACCGCAACAAGCGCGGCATCTGCGTGGATTTCCGGCAGCCGGCCGGCCTCGACGTC
GTGCGGCGGCTGATCGCGCAGGCCGACGTCGTGATCGAGAATTTCAAGGCCGGCACGATGGATGCGATGGGGCTCGGCTA
TGCGACGCTGAGCGCGCGCGATCCGCGGCTCGTGATGGGCAGCGTCACCGCGTTCGGCCCGCGCGGCCCGTTGCGCGACT
GGCCGGGCTTCGACCAGATCGCGCAGGGTTATGCGGGGCTGATGAGCCTCACCGGTTTTCCCGACGGCGAGCCGACCCGC
ACGGGCACCGCGATCGGCGATCTCAGCTCGGGGATGTGGGTCGCGACCGGCGTGATGGCCGCGCTTTACGAGCGCGAGCG
CACGGGGCGCGGGCAGCATGTCGGCACGTCGCTGCTCGAAAGCCTCGTGTCGCTGCTGAGCGTGCACGGGCAACGCTACC
TGAGCCTCGGCGACGTGCCGCGCCGCACCGGCAATGCGCATGCGGTGATCGCACCGTACGGCGTGTTCGAGACGGCCGAC
GGGCCGCTCAACCTCGCGCCGATCACGACCGACATGTGGCTGCGGCTGTGCCAGTTGCTGGATCTGCCCGAGCTGCCGAA
CGATCCGCGTTTCGCCACCAACGACGCGCGTGTCGCGCACCGCGACGACCTGAAAGCGTTGCTCGAAAGCCGGCTGCGCA
CGCGCGGCAAGCGCGAATGGACGCAGCGTTTCGTCGACGCCGGGCTGCCGGCCGGGCCGATCAACACGCTCGACGAAGTG
TTCGACGACCCGCAGCTCGCGCATTGCGGGCTGGTCGAGCCGGTCGCGCACCCGACGCTCGGCACGCTGCGCCAGGTCGT
GACGCCGCTCGGCGGGATGGGTGACGACATGCCGACGCCGCGCACGCGCCATGCGCCGCCGCTGCTCGGCGAGCATACGG
TCGACGTGCTGCGCGAAGCGGGCTATGGCGACGACGCGATCGACACACTGCTGGCCGAGCGCGCGATCTTCCAGGCGGAA
GCCGTGGCGGAGGCCGTGCAATGA

Upstream 100 bases:

>100_bases
TTCGCGGTCGAAACCCGCCACCAGACGCTGCCCGAATGAGCGGCACGCCGCGATCGTTCGGCAACAAGCCACACCCAGTC
ATCAATATCAGGAGTCCGGA

Downstream 100 bases:

>100_bases
GCGACACGACGAAACACGACAGCGCGTCGCACGTGACGGTCGACATGGTCGGCGAGCGGATCGCGCGTGTGCGGTTCGCG
AATCCGGCGCGACGCCATGC

Product: L-carnitine dehydratase/bile acid-inducible protein F

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 407; Mature: 407

Protein sequence:

>407_residues
MQALQGIRVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLSCNRNKRGICVDFRQPAGLDV
VRRLIAQADVVIENFKAGTMDAMGLGYATLSARDPRLVMGSVTAFGPRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTR
TGTAIGDLSSGMWVATGVMAALYERERTGRGQHVGTSLLESLVSLLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
GPLNLAPITTDMWLRLCQLLDLPELPNDPRFATNDARVAHRDDLKALLESRLRTRGKREWTQRFVDAGLPAGPINTLDEV
FDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMGDDMPTPRTRHAPPLLGEHTVDVLREAGYGDDAIDTLLAERAIFQAE
AVAEAVQ

Sequences:

>Translated_407_residues
MQALQGIRVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLSCNRNKRGICVDFRQPAGLDV
VRRLIAQADVVIENFKAGTMDAMGLGYATLSARDPRLVMGSVTAFGPRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTR
TGTAIGDLSSGMWVATGVMAALYERERTGRGQHVGTSLLESLVSLLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
GPLNLAPITTDMWLRLCQLLDLPELPNDPRFATNDARVAHRDDLKALLESRLRTRGKREWTQRFVDAGLPAGPINTLDEV
FDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMGDDMPTPRTRHAPPLLGEHTVDVLREAGYGDDAIDTLLAERAIFQAE
AVAEAVQ
>Mature_407_residues
MQALQGIRVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLSCNRNKRGICVDFRQPAGLDV
VRRLIAQADVVIENFKAGTMDAMGLGYATLSARDPRLVMGSVTAFGPRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTR
TGTAIGDLSSGMWVATGVMAALYERERTGRGQHVGTSLLESLVSLLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
GPLNLAPITTDMWLRLCQLLDLPELPNDPRFATNDARVAHRDDLKALLESRLRTRGKREWTQRFVDAGLPAGPINTLDEV
FDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMGDDMPTPRTRHAPPLLGEHTVDVLREAGYGDDAIDTLLAERAIFQAE
AVAEAVQ

Specific function: Unknown

COG id: COG1804

COG function: function code C; Predicted acyl-CoA transferases/carnitine dehydratase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the CaiB/BaiF CoA-transferase family [H]

Homologues:

Organism=Homo sapiens, GI300863128, Length=411, Percent_Identity=37.956204379562, Blast_Score=300, Evalue=2e-81,
Organism=Homo sapiens, GI300863124, Length=437, Percent_Identity=35.9267734553776, Blast_Score=287, Evalue=1e-77,
Organism=Homo sapiens, GI300863126, Length=411, Percent_Identity=34.0632603406326, Blast_Score=242, Evalue=4e-64,
Organism=Homo sapiens, GI13376042, Length=437, Percent_Identity=32.7231121281465, Blast_Score=239, Evalue=4e-63,
Organism=Homo sapiens, GI42794625, Length=408, Percent_Identity=29.4117647058824, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI266456254, Length=413, Percent_Identity=29.2978208232446, Blast_Score=145, Evalue=9e-35,
Organism=Homo sapiens, GI266458397, Length=242, Percent_Identity=34.297520661157, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI266458393, Length=242, Percent_Identity=34.297520661157, Blast_Score=124, Evalue=1e-28,
Organism=Homo sapiens, GI42822893, Length=176, Percent_Identity=33.5227272727273, Blast_Score=93, Evalue=5e-19,
Organism=Homo sapiens, GI266458395, Length=176, Percent_Identity=33.5227272727273, Blast_Score=92, Evalue=9e-19,
Organism=Escherichia coli, GI87082093, Length=322, Percent_Identity=37.888198757764, Blast_Score=261, Evalue=6e-71,
Organism=Escherichia coli, GI1788717, Length=419, Percent_Identity=33.6515513126492, Blast_Score=196, Evalue=2e-51,
Organism=Escherichia coli, GI1786222, Length=406, Percent_Identity=22.9064039408867, Blast_Score=90, Evalue=3e-19,
Organism=Caenorhabditis elegans, GI32564160, Length=327, Percent_Identity=24.1590214067278, Blast_Score=82, Evalue=5e-16,
Organism=Caenorhabditis elegans, GI115535051, Length=327, Percent_Identity=23.5474006116208, Blast_Score=77, Evalue=1e-14,
Organism=Drosophila melanogaster, GI24648431, Length=397, Percent_Identity=41.5617128463476, Blast_Score=293, Evalue=1e-79,
Organism=Drosophila melanogaster, GI24585488, Length=320, Percent_Identity=28.4375, Blast_Score=119, Evalue=4e-27,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003673 [H]

Pfam domain/function: PF02515 CoA_transf_3 [H]

EC number: NA

Molecular weight: Translated: 43916; Mature: 43916

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00579 RIBOSOMAL_L29

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQALQGIRVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLS
CCCCCCCHHEEHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCHHCCCEEEEEE
CNRNKRGICVDFRQPAGLDVVRRLIAQADVVIENFKAGTMDAMGLGYATLSARDPRLVMG
ECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEECCCCCCEEEE
SVTAFGPRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTRTGTAIGDLSSGMWVATGVMA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH
ALYERERTGRGQHVGTSLLESLVSLLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCCCEECCC
GPLNLAPITTDMWLRLCQLLDLPELPNDPRFATNDARVAHRDDLKALLESRLRTRGKREW
CCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
TQRFVDAGLPAGPINTLDEVFDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMGDDMPTP
HHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCC
RTRHAPPLLGEHTVDVLREAGYGDDAIDTLLAERAIFQAEAVAEAVQ
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MQALQGIRVVDLSRALSGPFCSMVLADLGADVIKVESGPHGDMSRAWGPFDRGVSTYYLS
CCCCCCCHHEEHHHHHCCHHHHHHHHHCCCCEEEECCCCCCCHHHCCCCHHCCCEEEEEE
CNRNKRGICVDFRQPAGLDVVRRLIAQADVVIENFKAGTMDAMGLGYATLSARDPRLVMG
ECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHCCEEEECCCCCCEEEE
SVTAFGPRGPLRDWPGFDQIAQGYAGLMSLTGFPDGEPTRTGTAIGDLSSGMWVATGVMA
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHCCCCHHHHHHHHH
ALYERERTGRGQHVGTSLLESLVSLLSVHGQRYLSLGDVPRRTGNAHAVIAPYGVFETAD
HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCEEEECCCCEECCC
GPLNLAPITTDMWLRLCQLLDLPELPNDPRFATNDARVAHRDDLKALLESRLRTRGKREW
CCCEECCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHH
TQRFVDAGLPAGPINTLDEVFDDPQLAHCGLVEPVAHPTLGTLRQVVTPLGGMGDDMPTP
HHHHHHCCCCCCCCHHHHHHHCCCCCCCCCCCCHHCCCCHHHHHHHHHHCCCCCCCCCCC
RTRHAPPLLGEHTVDVLREAGYGDDAIDTLLAERAIFQAEAVAEAVQ
CCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9205837; 9278503; 8125343 [H]