Click here to switch to the map view.

The map label for this gene is yqgF [C]

Identifier: 78065437

GI number: 78065437

Start: 884974

End: 885423

Strand: Direct

Name: yqgF [C]

Synonym: Bcep18194_A3963

Alternate gene names: 78065437

Gene position: 884974-885423 (Clockwise)

Preceding gene: 78065436

Following gene: 78065438

Centisome position: 23.96

GC content: 67.78

Gene sequence:

>450_bases
ATGAGTGGCGCGAGCGCGCGCGATGCGACGCTCCTCGCGTTCGACTACGGTGAAAAACGTATCGGCGTCGCGGTCGGCAA
TGCGCTGACGCGCTCGGCCCGTGCGCTCGTCGTGATCCAGAACCTGAACCGCGAACACCGCTTCAAGGCGGTCGGCGACC
TGCTGGCCGAATGGAGGCCGGACGCGCTCGTCGTCGGCCTGCCGATGCATCCGGACGGCACGCCGCACGACATGACGCAG
CAGGCGAAGCGCTTCGGCAACCAGCTGAACGGCCGCTTCGGGCTGCCCGTCACGTGGGTCGACGAGCGCTATTCGTCGGT
CGAAGCCGAGGCCGGGCTGCGCGAGCGCAACGTGCGCGGCCGCGCCCGGGCCGAGATGCTCGATGCCGAGGCCGCGCGCG
TCATCCTTCAACAGTATCTCGATCAATTGTCCGACCATGAGCACCATTGA

Upstream 100 bases:

>100_bases
CGCGCATCGTGTTCGACACGCCGGCCGAAGAGCGCTTCGAAGCCGCACTCGGCCTGCTCGGCGTCAGCTCGTCGATGCTG
TCCGGCGAAGCAGGGCACGC

Downstream 100 bases:

>100_bases
CGCCGAGGCGCTTTACCGCGTCCTGCTCGACCAGATCCGTGCCGCGTACGGCACGGCTTTCGCCGAACCGGGCGGCCCGC
GGCTCGCCGGCATCCACAGC

Product: Holliday junction resolvase-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 149; Mature: 148

Protein sequence:

>149_residues
MSGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRPDALVVGLPMHPDGTPHDMTQ
QAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLDAEAARVILQQYLDQLSDHEHH

Sequences:

>Translated_149_residues
MSGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRPDALVVGLPMHPDGTPHDMTQ
QAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLDAEAARVILQQYLDQLSDHEHH
>Mature_148_residues
SGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRPDALVVGLPMHPDGTPHDMTQQ
AKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRGRARAEMLDAEAARVILQQYLDQLSDHEHH

Specific function: Could be a nuclease that resolves Holliday junction intermediates in genetic recombination [H]

COG id: COG0816

COG function: function code L; Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis)

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the yqgF HJR family [H]

Homologues:

Organism=Escherichia coli, GI1789318, Length=134, Percent_Identity=42.5373134328358, Blast_Score=112, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005227
- InterPro:   IPR006641
- InterPro:   IPR012337 [H]

Pfam domain/function: PF03652 UPF0081 [H]

EC number: NA

Molecular weight: Translated: 16612; Mature: 16481

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP
CCCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHDMTQQAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRG
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCHHHCCCCH
RARAEMLDAEAARVILQQYLDQLSDHEHH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SGASARDATLLAFDYGEKRIGVAVGNALTRSARALVVIQNLNREHRFKAVGDLLAEWRP
CCCCCCCCEEEEEECCCCEEHHHHHHHHHHHHHEEEEEECCCHHHHHHHHHHHHHHCCC
DALVVGLPMHPDGTPHDMTQQAKRFGNQLNGRFGLPVTWVDERYSSVEAEAGLRERNVRG
CEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHHCCHHHCCCCH
RARAEMLDAEAARVILQQYLDQLSDHEHH
HHHHHHHHHHHHHHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA