Click here to switch to the map view.

The map label for this gene is hslR [H]

Identifier: 78065310

GI number: 78065310

Start: 742644

End: 743051

Strand: Direct

Name: hslR [H]

Synonym: Bcep18194_A3836

Alternate gene names: 78065310

Gene position: 742644-743051 (Clockwise)

Preceding gene: 78065309

Following gene: 78065311

Centisome position: 20.1

GC content: 67.16

Gene sequence:

>408_bases
ATGAATTACAAGATTTCGACCGAACCGGGCGCGAAGCTGCGCATCGACAAATGGCTGTGGGCGGCCCGGTTCTTCAAGAC
GCGCTCGCTTGCGACCGATGCGGTCGACAAGGGGCACGTGAAGATCGGCGGCGCGGCGGTCAAGCCGGCGAAGGAAGTGC
GCGTGGGCGACGAGGTCGAGATTGCGATCGACGGCATCGTCTGGCACATTGCCGTGCTCGGCGTGTGCGACGTGCGCGGG
CCGGCGAGCGTCGCGCAGACGCTTTACGCGGAAACGGAAGCGGGGCGGGCCGCACGGCTCGCCGAACTGGAGCGGCGCCG
CACGTATCGCGAGCCGGCAGCGGAATTGCACGGCCGGCCGACGAAGCGCGACCGGCGCATCATCGACAGATTTTCTGGTG
GGAGCTGA

Upstream 100 bases:

>100_bases
CGAAACGGTGAGCTGAGATGAAACGACCCCCACGCTCACTTCGTTCACTGCCCCCCGAGGGGGCGGTCAGCCTCCTTGGG
GCGGCCCGGCGGAGGCTGCG

Downstream 100 bases:

>100_bases
ACATCTGGTCGAACGTCGCCCGCGCGCTCCCGTATTCGGTCGTGCGGTCGGTAACGGCTCCGGACAGGCAGATGGTGGTG
GTGCCGGCAATGAGTACCAG

Product: RNA-binding S4

Products: NA

Alternate protein names: HSP15 [H]

Number of amino acids: Translated: 135; Mature: 135

Protein sequence:

>135_residues
MNYKISTEPGAKLRIDKWLWAARFFKTRSLATDAVDKGHVKIGGAAVKPAKEVRVGDEVEIAIDGIVWHIAVLGVCDVRG
PASVAQTLYAETEAGRAARLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS

Sequences:

>Translated_135_residues
MNYKISTEPGAKLRIDKWLWAARFFKTRSLATDAVDKGHVKIGGAAVKPAKEVRVGDEVEIAIDGIVWHIAVLGVCDVRG
PASVAQTLYAETEAGRAARLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS
>Mature_135_residues
MNYKISTEPGAKLRIDKWLWAARFFKTRSLATDAVDKGHVKIGGAAVKPAKEVRVGDEVEIAIDGIVWHIAVLGVCDVRG
PASVAQTLYAETEAGRAARLAELERRRTYREPAAELHGRPTKRDRRIIDRFSGGS

Specific function: May play a important role in binding of nucleic acid. More specific for RNA [H]

COG id: COG1188

COG function: function code J; Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 S4 RNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789803, Length=130, Percent_Identity=33.0769230769231, Blast_Score=71, Evalue=3e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002942 [H]

Pfam domain/function: PF01479 S4 [H]

EC number: NA

Molecular weight: Translated: 14938; Mature: 14938

Theoretical pI: Translated: 10.46; Mature: 10.46

Prosite motif: PS50889 S4

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNYKISTEPGAKLRIDKWLWAARFFKTRSLATDAVDKGHVKIGGAAVKPAKEVRVGDEVE
CCEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCEE
IAIDGIVWHIAVLGVCDVRGPASVAQTLYAETEAGRAARLAELERRRTYREPAAELHGRP
EEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCC
TKRDRRIIDRFSGGS
CHHHHHHHHHCCCCC
>Mature Secondary Structure
MNYKISTEPGAKLRIDKWLWAARFFKTRSLATDAVDKGHVKIGGAAVKPAKEVRVGDEVE
CCEECCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHCCCCCCEE
IAIDGIVWHIAVLGVCDVRGPASVAQTLYAETEAGRAARLAELERRRTYREPAAELHGRP
EEEHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHCCCC
TKRDRRIIDRFSGGS
CHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9286976 [H]