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The map label for this gene is exbD1 [H]

Identifier: 78065215

GI number: 78065215

Start: 628597

End: 629055

Strand: Direct

Name: exbD1 [H]

Synonym: Bcep18194_A3739

Alternate gene names: 78065215

Gene position: 628597-629055 (Clockwise)

Preceding gene: 78065214

Following gene: 78065216

Centisome position: 17.02

GC content: 72.11

Gene sequence:

>459_bases
ATGGCATTCGGCGGACTCGAGCACCACAAGACGTCCGCGCCGATGGCGGAGATCAACATGACTCCGCTGATCGACGTGAT
GCTGGTGCTGCTCGTCATCTTCATCATCACCGCGCCGCTGATGACGCACGCGATCCGGCTCGACCTGCCGAAGGTCGCGG
CCAGCGTCGCGCACGACACGCCGCAATCCGTCACCTTGTCGATCGACGACGCGGGCAAGCTGTACTGGGACGACTCACCG
GTCGCGCTCGATGCGCTGCCCGCGCGCTTCCGGGCCGCCGCCGCGGGCGGCGCGCCGCCCGAGCTGCGGCTGCGCGCATC
GCGCGCGACCCGCTACGACGTGATCGCGCAGGTGATGGGCGCCGCGCAGGCCGCCGGCCTCACGCGGATCGGCTTCGTGA
CCGACGTGCCGCCGCCGGGCGGTTCCGCGGCGGCGCCTGCCGTGCCGGCCAACCGCTGA

Upstream 100 bases:

>100_bases
CGTGCGGCAGCTCGCCGAGGAGCTCGACGGCTTTGCGCGCGACCTGCACGTGTTCGTGTGCGCGCAGGAAGCCTGACGCA
CCCATTCCGGAGAAGCGGCC

Downstream 100 bases:

>100_bases
GCGGAGCCGGCGGGCCTATCCCTGCCTTGGGATCGGGCCGCGCGCCGCAAGACCGGTCGAATGGGCCGGCGCGGGCGGTA
TAATCAACGTTTTTCCCGGT

Product: biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 152; Mature: 151

Protein sequence:

>152_residues
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAASVAHDTPQSVTLSIDDAGKLYWDDSP
VALDALPARFRAAAAGGAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPPGGSAAAPAVPANR

Sequences:

>Translated_152_residues
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAASVAHDTPQSVTLSIDDAGKLYWDDSP
VALDALPARFRAAAAGGAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPPGGSAAAPAVPANR
>Mature_151_residues
AFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAASVAHDTPQSVTLSIDDAGKLYWDDSPV
ALDALPARFRAAAAGGAPPELRLRASRATRYDVIAQVMGAAQAAGLTRIGFVTDVPPPGGSAAAPAVPANR

Specific function: Involved in the tonB-dependent energy-dependent transport of various receptor-bound substrates [H]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

Organism=Escherichia coli, GI1789380, Length=133, Percent_Identity=30.8270676691729, Blast_Score=73, Evalue=9e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15813; Mature: 15681

Theoretical pI: Translated: 6.97; Mature: 6.97

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAASVAHDT
CCCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
PQSVTLSIDDAGKLYWDDSPVALDALPARFRAAAAGGAPPELRLRASRATRYDVIAQVMG
CCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHH
AAQAAGLTRIGFVTDVPPPGGSAAAPAVPANR
HHHHCCCEEECEEECCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AFGGLEHHKTSAPMAEINMTPLIDVMLVLLVIFIITAPLMTHAIRLDLPKVAASVAHDT
CCCCCCCCCCCCCHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCC
PQSVTLSIDDAGKLYWDDSPVALDALPARFRAAAAGGAPPELRLRASRATRYDVIAQVMG
CCEEEEEECCCCCEEECCCCCCHHHHHHHHHHHHCCCCCHHEEEECCHHHHHHHHHHHHH
AAQAAGLTRIGFVTDVPPPGGSAAAPAVPANR
HHHHCCCEEECEEECCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9371459 [H]