Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
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Accession | NC_007508 |
Length | 5,178,466 |
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The map label for this gene is manB [H]
Identifier: 78049581
GI number: 78049581
Start: 4621195
End: 4623540
Strand: Reverse
Name: manB [H]
Synonym: XCV4025
Alternate gene names: 78049581
Gene position: 4623540-4621195 (Counterclockwise)
Preceding gene: 78049582
Following gene: 78049571
Centisome position: 89.28
GC content: 67.86
Gene sequence:
>2346_bases ATGAGCAAGGCGAACGAGCGCAGGCAGGGGATGTCCAGCGTGCGTACGAGTGGTCCGGTGTTGGGAGGCATGTTGCTGCT GCTGGCTGCCTGGTTCGGCTGGAACAGTTATGCGCAATGGCGCCAGGACGCGGTGGCGCAAGGGCTGGAGCAGGCGCGCG ACCGCGCGGTGCAGGACGTGGGCCAGGCCATGGCCACCCAGGCCAGCCAGCTCGACGCGGTGCTCAAGCAGCCGCCGGTC ATCGCTGCGTTGGCCGGTGGCGACGCGCTGGCGGCCGCATCGGCCATCCGCGAGCGCTTCAAGGGCGCCGAGGATGTGCA GGTGCTGCCTGGCGACCTTGCCGCGGCCTATGCCAACCCCAAGGATTTCGGTTACGCGCGTCTGAGCCTGCTCGAATCGG CGCAGGTGGCCGACCGGGCGCAGGTCCGGGTGGTACGCGAGGCCAAACAAGTCCGCCTGGGCGTGGCTGCCGCGGTGCGC CTTGGCGGGCAGCCGGCGGTGGCGTATGCGCGGTTGCCGTTACTGCGCCTGACCGGCCCGCTGGATGCAATCGCGGCACC GGACAGCGCCTACCTGGCCGTGCGCCAGGGCAGCTACAACGTGGCCCAGCAGGGCGATATGGCACTGGCCGATGCGGCCG AAACGCTGGCAAGGCCGCTTGGGACCAGCGGCTTGCGCGTGGCTGCGGCGGTGCCGCAAGGCGACAGCGGCCCACTGGGC CTGGGCGCCGTCGGTTGCGCCATCGTGGCGGCATTGCTGCTGATCATTGCGGTACTGCTGGTGCTGGCCAGCCGGGGTCA GGTGGCCTTGCCACGGCGCCGGGTTGCCGACCAATCCGGCGCCGATGAACCCACCTTCAGTCAGAGCCTGCAGCACGACG CCAGCGTTGCCAGCGAGGCACGCGCGCTGGACGCCGAGGCACCGCCGGCACCGCCAGCGCTGGTGCCGGCGGTGCAGGTC GCCACCGAGATGTTCCGTGCCTACGACATCCGCGGCGTGGTCGGTAAGGACCTCAACCCCGGCGTTGCCGCCTTGGTGGG CCAGGCCATCGGCAGCGTGATGCAGGCGCAGGGACTGCGCGATGTGGTGGTCGGTCGCGACGGCCGGCTGTCCGGGCCGG AGCTGAGCAACGGCCTGATCGAAGGCCTGCGCCGCGCCGGCTGCAACGTCACCGACATCGGCCTGGCACCGACGCCGGTG GTGTACTTCGGCGCCTACGAGCTGCGTGCCGGCAGCTGCGTGGCGGTCACCGGCAGCCACAATCCGCCGGACTACAACGG TTTCAAGATCGTGATCGGCGGCGAGACCTTGTCCGGCGCCGCCATCGCCGAACTGCACCAGCGCATCAACGAAGGTCGCC TGCATACCGCCGCCACGCCTGGCGAACTGGAACAGCGCGACATCAGCGATGCCTACATCCAGCGTATCGCCGATGACGTC CAGCTCGATCGCCCGATCAAGGTGGTGGTGGACGCCGGCAACGGCGTGGCCGGTGAGATCGCGCCGCGCCTGCTGGAAGC GATCGGCGCCGAAGTGGTGCCGTTGTACTGCGACATCGATGGCACCTTCCCCAACCATCACCCTGATCCGAGCGAGCCGC ACAACCTCAACGATCTGGTGAAGATGGTGCAGCGTTTCGATGCGGATATCGGCGTGGCGTTCGATGGCGATGCCGATCGC CTGGGCGTGGTGACCAAGGAAGGCGCGATGGTGTTCCCCGACCGCCTGCTGATGCTGTTCGCCGCCGATGTCCTGCAGCG CAACCCTGGCGCATTGGTCATCTACGACGTGAAGTGCACCGGCAAGCTGTCCGACTACGTGTTGCGCAATGGCGGTAGTC CGCTGATGTGGAAGACCGGGCATTCGCTGATCAAATCCAAGATGCGCGAGACCGATGCTGAGCTGGCCGGCGAGATGAGC GGCCACTTCTTCTTCAAGGAGCGCTGGTACGGCTTTGACGACGGCATCTACGCCGCCGCACGCCTGCTGGAAATCCTGGC CCAGCGCGAGGAAACCCCGTCCGACGTGCTGGACGCCCTGCCCGAGAGCGTCTCCACGCCGGAGATCAAGGTGCCGGTGG AAGGCGATGCGCATGCGCTGGTGGCGCGCTTTGTCGCGCGTGCGCAGACCGGCGAAGAATCGCCGTTCGAATCGGCGCGG CTGTCGACCATCGACGGGCTGCGCGCGGACTTCATCGACGGCTGGGGGCTGGTACGCGCCTCCAATACAACGCCGATCCT GGTGCTGCGGTTCGAAGCCGACAGCGAGGCCGCATTGCAGCGGATTCGCACGCTGTTCCGCAACGAACTGCAGACGTTGT TGCCGGAGCATCCATTGGCGTTTTGA
Upstream 100 bases:
>100_bases ATCGTGCGTATGGGCTTGCAAGTGGTGGATACTTTCGTCGACAGCGCGCGGGGAGCGGGTGGATTCGGCCACACCGGCGT GCGCTGACAGGGGAAATTAC
Downstream 100 bases:
>100_bases TCGCCGGATGCGCGGACCGTCCGCTGCGTTGCCTGGGCAGGGGCAGGGGCAGCGCAGCTGGGCCGGCGGGCGACGCGGCG GGCCGTTATCCGGCTCGCTT
Product: phosphomannomutase
Products: NA
Alternate protein names: PMM / PGM [H]
Number of amino acids: Translated: 781; Mature: 780
Protein sequence:
>781_residues MSKANERRQGMSSVRTSGPVLGGMLLLLAAWFGWNSYAQWRQDAVAQGLEQARDRAVQDVGQAMATQASQLDAVLKQPPV IAALAGGDALAAASAIRERFKGAEDVQVLPGDLAAAYANPKDFGYARLSLLESAQVADRAQVRVVREAKQVRLGVAAAVR LGGQPAVAYARLPLLRLTGPLDAIAAPDSAYLAVRQGSYNVAQQGDMALADAAETLARPLGTSGLRVAAAVPQGDSGPLG LGAVGCAIVAALLLIIAVLLVLASRGQVALPRRRVADQSGADEPTFSQSLQHDASVASEARALDAEAPPAPPALVPAVQV ATEMFRAYDIRGVVGKDLNPGVAALVGQAIGSVMQAQGLRDVVVGRDGRLSGPELSNGLIEGLRRAGCNVTDIGLAPTPV VYFGAYELRAGSCVAVTGSHNPPDYNGFKIVIGGETLSGAAIAELHQRINEGRLHTAATPGELEQRDISDAYIQRIADDV QLDRPIKVVVDAGNGVAGEIAPRLLEAIGAEVVPLYCDIDGTFPNHHPDPSEPHNLNDLVKMVQRFDADIGVAFDGDADR LGVVTKEGAMVFPDRLLMLFAADVLQRNPGALVIYDVKCTGKLSDYVLRNGGSPLMWKTGHSLIKSKMRETDAELAGEMS GHFFFKERWYGFDDGIYAAARLLEILAQREETPSDVLDALPESVSTPEIKVPVEGDAHALVARFVARAQTGEESPFESAR LSTIDGLRADFIDGWGLVRASNTTPILVLRFEADSEAALQRIRTLFRNELQTLLPEHPLAF
Sequences:
>Translated_781_residues MSKANERRQGMSSVRTSGPVLGGMLLLLAAWFGWNSYAQWRQDAVAQGLEQARDRAVQDVGQAMATQASQLDAVLKQPPV IAALAGGDALAAASAIRERFKGAEDVQVLPGDLAAAYANPKDFGYARLSLLESAQVADRAQVRVVREAKQVRLGVAAAVR LGGQPAVAYARLPLLRLTGPLDAIAAPDSAYLAVRQGSYNVAQQGDMALADAAETLARPLGTSGLRVAAAVPQGDSGPLG LGAVGCAIVAALLLIIAVLLVLASRGQVALPRRRVADQSGADEPTFSQSLQHDASVASEARALDAEAPPAPPALVPAVQV ATEMFRAYDIRGVVGKDLNPGVAALVGQAIGSVMQAQGLRDVVVGRDGRLSGPELSNGLIEGLRRAGCNVTDIGLAPTPV VYFGAYELRAGSCVAVTGSHNPPDYNGFKIVIGGETLSGAAIAELHQRINEGRLHTAATPGELEQRDISDAYIQRIADDV QLDRPIKVVVDAGNGVAGEIAPRLLEAIGAEVVPLYCDIDGTFPNHHPDPSEPHNLNDLVKMVQRFDADIGVAFDGDADR LGVVTKEGAMVFPDRLLMLFAADVLQRNPGALVIYDVKCTGKLSDYVLRNGGSPLMWKTGHSLIKSKMRETDAELAGEMS GHFFFKERWYGFDDGIYAAARLLEILAQREETPSDVLDALPESVSTPEIKVPVEGDAHALVARFVARAQTGEESPFESAR LSTIDGLRADFIDGWGLVRASNTTPILVLRFEADSEAALQRIRTLFRNELQTLLPEHPLAF >Mature_780_residues SKANERRQGMSSVRTSGPVLGGMLLLLAAWFGWNSYAQWRQDAVAQGLEQARDRAVQDVGQAMATQASQLDAVLKQPPVI AALAGGDALAAASAIRERFKGAEDVQVLPGDLAAAYANPKDFGYARLSLLESAQVADRAQVRVVREAKQVRLGVAAAVRL GGQPAVAYARLPLLRLTGPLDAIAAPDSAYLAVRQGSYNVAQQGDMALADAAETLARPLGTSGLRVAAAVPQGDSGPLGL GAVGCAIVAALLLIIAVLLVLASRGQVALPRRRVADQSGADEPTFSQSLQHDASVASEARALDAEAPPAPPALVPAVQVA TEMFRAYDIRGVVGKDLNPGVAALVGQAIGSVMQAQGLRDVVVGRDGRLSGPELSNGLIEGLRRAGCNVTDIGLAPTPVV YFGAYELRAGSCVAVTGSHNPPDYNGFKIVIGGETLSGAAIAELHQRINEGRLHTAATPGELEQRDISDAYIQRIADDVQ LDRPIKVVVDAGNGVAGEIAPRLLEAIGAEVVPLYCDIDGTFPNHHPDPSEPHNLNDLVKMVQRFDADIGVAFDGDADRL GVVTKEGAMVFPDRLLMLFAADVLQRNPGALVIYDVKCTGKLSDYVLRNGGSPLMWKTGHSLIKSKMRETDAELAGEMSG HFFFKERWYGFDDGIYAAARLLEILAQREETPSDVLDALPESVSTPEIKVPVEGDAHALVARFVARAQTGEESPFESARL STIDGLRADFIDGWGLVRASNTTPILVLRFEADSEAALQRIRTLFRNELQTLLPEHPLAF
Specific function: The phosphomannomutase activity produces a precursor for alginate polymerization. The alginate layer causes a mucoid phenotype and provides a protective barrier against host immune defenses and antibiotics. Also involved in core-LPS biosynthesis due to it
COG id: COG1109
COG function: function code G; Phosphomannomutase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phosphohexose mutase family [H]
Homologues:
Organism=Escherichia coli, GI1788361, Length=464, Percent_Identity=32.9741379310345, Blast_Score=224, Evalue=2e-59, Organism=Escherichia coli, GI1789566, Length=452, Percent_Identity=28.7610619469027, Blast_Score=107, Evalue=3e-24,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005844 - InterPro: IPR016055 - InterPro: IPR005845 - InterPro: IPR005846 - InterPro: IPR005843 - InterPro: IPR016066 - InterPro: IPR005841 [H]
Pfam domain/function: PF02878 PGM_PMM_I; PF02879 PGM_PMM_II; PF02880 PGM_PMM_III; PF00408 PGM_PMM_IV [H]
EC number: =5.4.2.2; =5.4.2.8 [H]
Molecular weight: Translated: 82816; Mature: 82685
Theoretical pI: Translated: 4.91; Mature: 4.91
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKANERRQGMSSVRTSGPVLGGMLLLLAAWFGWNSYAQWRQDAVAQGLEQARDRAVQDV CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH GQAMATQASQLDAVLKQPPVIAALAGGDALAAASAIRERFKGAEDVQVLPGDLAAAYANP HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHCCCC KDFGYARLSLLESAQVADRAQVRVVREAKQVRLGVAAAVRLGGQPAVAYARLPLLRLTGP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCC LDAIAAPDSAYLAVRQGSYNVAQQGDMALADAAETLARPLGTSGLRVAAAVPQGDSGPLG HHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC LGAVGCAIVAALLLIIAVLLVLASRGQVALPRRRVADQSGADEPTFSQSLQHDASVASEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RALDAEAPPAPPALVPAVQVATEMFRAYDIRGVVGKDLNPGVAALVGQAIGSVMQAQGLR HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH DVVVGRDGRLSGPELSNGLIEGLRRAGCNVTDIGLAPTPVVYFGAYELRAGSCVAVTGSH HHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCEEECCCCEEEEECCC NPPDYNGFKIVIGGETLSGAAIAELHQRINEGRLHTAATPGELEQRDISDAYIQRIADDV CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH QLDRPIKVVVDAGNGVAGEIAPRLLEAIGAEVVPLYCDIDGTFPNHHPDPSEPHNLNDLV CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH KMVQRFDADIGVAFDGDADRLGVVTKEGAMVFPDRLLMLFAADVLQRNPGALVIYDVKCT HHHHHHCCCCEEEECCCCCCCCEEECCCCEECHHHHHHHHHHHHHHCCCCEEEEEEEEEC GKLSDYVLRNGGSPLMWKTGHSLIKSKMRETDAELAGEMSGHFFFKERWYGFDDGIYAAA CCHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCHHHHHH RLLEILAQREETPSDVLDALPESVSTPEIKVPVEGDAHALVARFVARAQTGEESPFESAR HHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHH LSTIDGLRADFIDGWGLVRASNTTPILVLRFEADSEAALQRIRTLFRNELQTLLPEHPLA HHHHCCCHHHHHCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC F C >Mature Secondary Structure SKANERRQGMSSVRTSGPVLGGMLLLLAAWFGWNSYAQWRQDAVAQGLEQARDRAVQDV CCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH GQAMATQASQLDAVLKQPPVIAALAGGDALAAASAIRERFKGAEDVQVLPGDLAAAYANP HHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHCCCCCCEECCCHHHHHCCCC KDFGYARLSLLESAQVADRAQVRVVREAKQVRLGVAAAVRLGGQPAVAYARLPLLRLTGP CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCHHHCCCC LDAIAAPDSAYLAVRQGSYNVAQQGDMALADAAETLARPLGTSGLRVAAAVPQGDSGPLG HHHHCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCC LGAVGCAIVAALLLIIAVLLVLASRGQVALPRRRVADQSGADEPTFSQSLQHDASVASEA HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHHHHHHHH RALDAEAPPAPPALVPAVQVATEMFRAYDIRGVVGKDLNPGVAALVGQAIGSVMQAQGLR HHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCH DVVVGRDGRLSGPELSNGLIEGLRRAGCNVTDIGLAPTPVVYFGAYELRAGSCVAVTGSH HHHCCCCCCCCCCCHHHHHHHHHHHCCCCEEECCCCCCCEEEECCEEECCCCEEEEECCC NPPDYNGFKIVIGGETLSGAAIAELHQRINEGRLHTAATPGELEQRDISDAYIQRIADDV CCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCHHHHHHHHHHHHHHHHH QLDRPIKVVVDAGNGVAGEIAPRLLEAIGAEVVPLYCDIDGTFPNHHPDPSEPHNLNDLV CCCCCEEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHH KMVQRFDADIGVAFDGDADRLGVVTKEGAMVFPDRLLMLFAADVLQRNPGALVIYDVKCT HHHHHHCCCCEEEECCCCCCCCEEECCCCEECHHHHHHHHHHHHHHCCCCEEEEEEEEEC GKLSDYVLRNGGSPLMWKTGHSLIKSKMRETDAELAGEMSGHFFFKERWYGFDDGIYAAA CCHHHHHHHCCCCCEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEHHHCCCCCCHHHHHH RLLEILAQREETPSDVLDALPESVSTPEIKVPVEGDAHALVARFVARAQTGEESPFESAR HHHHHHHHCCCCHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHCCCCCCCCHHHH LSTIDGLRADFIDGWGLVRASNTTPILVLRFEADSEAALQRIRTLFRNELQTLLPEHPLA HHHHCCCHHHHHCCCCEEEECCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCC F C
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 1903398; 10984043; 7515870; 10481091; 8050998; 11716469; 11839312 [H]