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The map label for this gene is insF1 [H]

Identifier: 78048422

GI number: 78048422

Start: 3259744

End: 3260604

Strand: Reverse

Name: insF1 [H]

Synonym: XCV2866

Alternate gene names: 78048422

Gene position: 3260604-3259744 (Counterclockwise)

Preceding gene: 78048423

Following gene: 78048421

Centisome position: 62.96

GC content: 61.32

Gene sequence:

>861_bases
GTGATCGAACGTTGCCGCGATGAGTTTCCGATTCGGCTGATGTGCCGGTGCCTGAAGGTATCGGCCAGCGGCTACTACGA
GTGGAGTAAGCGTCCTGCGAGCGCCCGGCAGCTCGACAATGAGCGCCTGGTCGTACGGATGCGCGAACTACACGAAGACA
GCCGCGGTACGTTGGGGGCTGGCCGCATGCGCGAAGACCTGGCTGAGGAGGGCGAGACCGCCAGCCTGAACCGGGTAGCA
CGCCTGATGGCGGCCGACGGCCTGCAGGGCTGGCCCCGGCGCAAGCGTCGCGGGCAGCGTGGCAGTCCGGCCGTGACGCC
GCCGGGCGTGGTCAACCTGCTTGAACGTGATTTTCTCGCGCTGGAGCCGGAAACCAAGTGGGTGACCGATATCACCGAGA
TCAAGACCCAGCAGGGCAAGCTGTATCTGTGCATCGTATTGGATCTGTACGACCAGCGCATTGTTGGCTGGTCAATGCAC
GCTCGGCAGGACCGTCAGATGGTGATCCGGGCTGTGCAGATGGCGGTCTGGCAGCGGCAAGGAAGCGATAAGGTGATTGT
GCATTCGGATCGTGGCAGTCAGTTCCGCAGCGGTGACTACCAGAGGTATCTGACGGCTAACGGGCTGATCTGTTCAATGA
GCGCTGTGGGGCATTGCGGCGACAACGCGGCCTGCGAAGGCTTTTTTGGACTACTCAAGCGTGAGCGGATCTATCGAACG
AGCTACGCCACACTGGATGGAGCAAGAGCGGATGTGTTTGACTACATCGAGCGACGCCACAACCCAAGGATGCGGCGAAG
GGCGGCCAAGCAGGATCAGAAGGTTGCAGCTCTTTTACAACCGTCCGTGATATCGGGGTAG

Upstream 100 bases:

>100_bases
TGGCTCGACTCAAGCGCGAGTTGGCGCGGGTGAAGAAGGAACGGGATTTTTTGCGAGAAGCGGCGACGTTCTTCGCAAAG
GGATCACCCTGAGGTATCAG

Downstream 100 bases:

>100_bases
AACCCTCGCGCCGCTGGTCGCCGGTGGGCTGATGGCCGCGCTTGGTGCGTGGCGTGCGCGTCGCGGCGACCCGGTGCTGC
GCATCGATCGATTTTCCCAC

Product: ISxac3 transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 286; Mature: 286

Protein sequence:

>286_residues
MIERCRDEFPIRLMCRCLKVSASGYYEWSKRPASARQLDNERLVVRMRELHEDSRGTLGAGRMREDLAEEGETASLNRVA
RLMAADGLQGWPRRKRRGQRGSPAVTPPGVVNLLERDFLALEPETKWVTDITEIKTQQGKLYLCIVLDLYDQRIVGWSMH
ARQDRQMVIRAVQMAVWQRQGSDKVIVHSDRGSQFRSGDYQRYLTANGLICSMSAVGHCGDNAACEGFFGLLKRERIYRT
SYATLDGARADVFDYIERRHNPRMRRRAAKQDQKVAALLQPSVISG

Sequences:

>Translated_286_residues
MIERCRDEFPIRLMCRCLKVSASGYYEWSKRPASARQLDNERLVVRMRELHEDSRGTLGAGRMREDLAEEGETASLNRVA
RLMAADGLQGWPRRKRRGQRGSPAVTPPGVVNLLERDFLALEPETKWVTDITEIKTQQGKLYLCIVLDLYDQRIVGWSMH
ARQDRQMVIRAVQMAVWQRQGSDKVIVHSDRGSQFRSGDYQRYLTANGLICSMSAVGHCGDNAACEGFFGLLKRERIYRT
SYATLDGARADVFDYIERRHNPRMRRRAAKQDQKVAALLQPSVISG
>Mature_286_residues
MIERCRDEFPIRLMCRCLKVSASGYYEWSKRPASARQLDNERLVVRMRELHEDSRGTLGAGRMREDLAEEGETASLNRVA
RLMAADGLQGWPRRKRRGQRGSPAVTPPGVVNLLERDFLALEPETKWVTDITEIKTQQGKLYLCIVLDLYDQRIVGWSMH
ARQDRQMVIRAVQMAVWQRQGSDKVIVHSDRGSQFRSGDYQRYLTANGLICSMSAVGHCGDNAACEGFFGLLKRERIYRT
SYATLDGARADVFDYIERRHNPRMRRRAAKQDQKVAALLQPSVISG

Specific function: Involved in the transposition of the insertion sequence IS3 [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Homo sapiens, GI310129419, Length=243, Percent_Identity=31.6872427983539, Blast_Score=115, Evalue=3e-26,
Organism=Escherichia coli, GI1788405, Length=274, Percent_Identity=39.051094890511, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1787263, Length=274, Percent_Identity=39.051094890511, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1786753, Length=274, Percent_Identity=39.051094890511, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1786570, Length=274, Percent_Identity=39.051094890511, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1786490, Length=274, Percent_Identity=39.051094890511, Blast_Score=171, Evalue=4e-44,
Organism=Escherichia coli, GI1789981, Length=258, Percent_Identity=32.5581395348837, Blast_Score=135, Evalue=4e-33,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 32707; Mature: 32707

Theoretical pI: Translated: 9.97; Mature: 9.97

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.4 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
5.9 %Cys+Met (Translated Protein)
2.4 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIERCRDEFPIRLMCRCLKVSASGYYEWSKRPASARQLDNERLVVRMRELHEDSRGTLGA
CCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCC
GRMREDLAEEGETASLNRVARLMAADGLQGWPRRKRRGQRGSPAVTPPGVVNLLERDFLA
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHEE
LEPETKWVTDITEIKTQQGKLYLCIVLDLYDQRIVGWSMHARQDRQMVIRAVQMAVWQRQ
ECCCCHHHHHHHHHHHCCCCEEEEEEEEHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
GSDKVIVHSDRGSQFRSGDYQRYLTANGLICSMSAVGHCGDNAACEGFFGLLKRERIYRT
CCCEEEEECCCCCCCCCCCCCEEEECCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SYATLDGARADVFDYIERRHNPRMRRRAAKQDQKVAALLQPSVISG
HHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MIERCRDEFPIRLMCRCLKVSASGYYEWSKRPASARQLDNERLVVRMRELHEDSRGTLGA
CCCCCCCCCCHHHHHHHHHHHCCCCCHHCCCCCHHHHCCCHHHHHHHHHHCCCCCCCCCC
GRMREDLAEEGETASLNRVARLMAADGLQGWPRRKRRGQRGSPAVTPPGVVNLLERDFLA
HHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCHHHHCCCCCCCCCCCCHHHHHHHHHHEE
LEPETKWVTDITEIKTQQGKLYLCIVLDLYDQRIVGWSMHARQDRQMVIRAVQMAVWQRQ
ECCCCHHHHHHHHHHHCCCCEEEEEEEEHHCCHHHCCHHHHHHHHHHHHHHHHHHHHHHC
GSDKVIVHSDRGSQFRSGDYQRYLTANGLICSMSAVGHCGDNAACEGFFGLLKRERIYRT
CCCEEEEECCCCCCCCCCCCCEEEECCCEEEEHHHHCCCCCCHHHHHHHHHHHHHHHHHH
SYATLDGARADVFDYIERRHNPRMRRRAAKQDQKVAALLQPSVISG
HHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2987844; 9278503 [H]