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The map label for this gene is virB9 [H]

Identifier: 78048363

GI number: 78048363

Start: 3193467

End: 3194234

Strand: Reverse

Name: virB9 [H]

Synonym: XCV2807

Alternate gene names: 78048363

Gene position: 3194234-3193467 (Counterclockwise)

Preceding gene: 78048364

Following gene: 78048360

Centisome position: 61.68

GC content: 44.4

Gene sequence:

>768_bases
ATGAAACCCTCTAAAATCTATGGGGCTGTATTGACTGCAGCGCTAATATTTCCCTTATGTGTGAGTTCGGTGAACGCTCA
GGTCGTGCAGGAGTATGAGTACGCTCCCAATCAAATTTATCAGGTCCGTACTGGATTAGGTATCACCACTCAGATTGAAC
TCAGCCCGAATGAGAAAATTCTGGACTACAGCACTGGGTTTTCCGGAGGCTGGGAACTTACTCGGCGTGAAAACGTTTTT
TATCTAAAGCCCAAGAATGTTGATGTAGATACGAATATGATGATTCGTACGGCCACTCATTCTTACATTTTAGAACTGAA
AGTTGTAGCGACAGATTGGCAGCGGCTTGAGCAAGCTAAGCAGGCAGGCGTTCAATATAAGGTTGTTTTCTCCTACCCAA
AAGACACAAGTTTTAATAACGTCGAAGACGCTGATGCGGCAAAAAATGGGCCATTGCTGAGTGCCAAAATCCTCAAGGAT
CGAAGGTACTACTATGATTATGATTACTCGACTCGAAGTAAAAAGTCATGGCTGATTCCAAGTCGTGTATATGATGATGG
AAAATTCACTTATATTAATATGGATTTGACGCGCTTCCCGTCAGGAAATTTTCCCGCCGTCTTTGCCCGGGAAAAAGAGC
ATAGCGAGGACTTTCTTGTGAATACGACCGTCGAAGGTAATACCTTGATCGTTCACGGGACGTATCCTTTCCTGGTGGTT
CGTCACGGCGATAATGTTGTCGGTCTGCGAAGGAACAAGCAAAAGTGA

Upstream 100 bases:

>100_bases
CAGGATATTCCAGCCAAGTGCAGCCGGCGAGCCAACCTCAGGCGCAGCCCGCGGTCCAATATCAAGGGATGCCGAACAAT
GTCAAAGGAGCTAGCGGTCG

Downstream 100 bases:

>100_bases
ACTCAAATATTCCAAACAGCCCTGATGAGCGTTCTCACGACAACCGTGATGGCGATCAAGCCCGTAGTCAATATGATGAG
CGCAGCAATCCCTACTTCGT

Product: type IV secretion system protein VirB9

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MKPSKIYGAVLTAALIFPLCVSSVNAQVVQEYEYAPNQIYQVRTGLGITTQIELSPNEKILDYSTGFSGGWELTRRENVF
YLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFSYPKDTSFNNVEDADAAKNGPLLSAKILKD
RRYYYDYDYSTRSKKSWLIPSRVYDDGKFTYINMDLTRFPSGNFPAVFAREKEHSEDFLVNTTVEGNTLIVHGTYPFLVV
RHGDNVVGLRRNKQK

Sequences:

>Translated_255_residues
MKPSKIYGAVLTAALIFPLCVSSVNAQVVQEYEYAPNQIYQVRTGLGITTQIELSPNEKILDYSTGFSGGWELTRRENVF
YLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFSYPKDTSFNNVEDADAAKNGPLLSAKILKD
RRYYYDYDYSTRSKKSWLIPSRVYDDGKFTYINMDLTRFPSGNFPAVFAREKEHSEDFLVNTTVEGNTLIVHGTYPFLVV
RHGDNVVGLRRNKQK
>Mature_255_residues
MKPSKIYGAVLTAALIFPLCVSSVNAQVVQEYEYAPNQIYQVRTGLGITTQIELSPNEKILDYSTGFSGGWELTRRENVF
YLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAKQAGVQYKVVFSYPKDTSFNNVEDADAAKNGPLLSAKILKD
RRYYYDYDYSTRSKKSWLIPSRVYDDGKFTYINMDLTRFPSGNFPAVFAREKEHSEDFLVNTTVEGNTLIVHGTYPFLVV
RHGDNVVGLRRNKQK

Specific function: Unknown

COG id: COG3504

COG function: function code U; Type IV secretory pathway, VirB9 components

Gene ontology:

Cell location: Cell outer membrane (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the trbG/virB9 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010258
- InterPro:   IPR014148 [H]

Pfam domain/function: PF03524 CagX [H]

EC number: NA

Molecular weight: Translated: 29184; Mature: 29184

Theoretical pI: Translated: 9.21; Mature: 9.21

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPSKIYGAVLTAALIFPLCVSSVNAQVVQEYEYAPNQIYQVRTGLGITTQIELSPNEKI
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCEE
LDYSTGFSGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAK
EEECCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEECCEEEEEEEEEECCHHHHHHHH
QAGVQYKVVFSYPKDTSFNNVEDADAAKNGPLLSAKILKDRRYYYDYDYSTRSKKSWLIP
HCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEECC
SRVYDDGKFTYINMDLTRFPSGNFPAVFAREKEHSEDFLVNTTVEGNTLIVHGTYPFLVV
CEEECCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCEEEEE
RHGDNVVGLRRNKQK
ECCCCEEEECCCCCC
>Mature Secondary Structure
MKPSKIYGAVLTAALIFPLCVSSVNAQVVQEYEYAPNQIYQVRTGLGITTQIELSPNEKI
CCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHCCCCCEEEEEECCCCEEEEEEECCCCEE
LDYSTGFSGGWELTRRENVFYLKPKNVDVDTNMMIRTATHSYILELKVVATDWQRLEQAK
EEECCCCCCCEEEEECCCEEEECCCCCCCCCCEEEEEECCEEEEEEEEEECCHHHHHHHH
QAGVQYKVVFSYPKDTSFNNVEDADAAKNGPLLSAKILKDRRYYYDYDYSTRSKKSWLIP
HCCCEEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCEECC
SRVYDDGKFTYINMDLTRFPSGNFPAVFAREKEHSEDFLVNTTVEGNTLIVHGTYPFLVV
CEEECCCCEEEEEEEEEECCCCCCCEEEEECCCCCCCEEEEEEECCCEEEEECCCEEEEE
RHGDNVVGLRRNKQK
ECCCCEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12910271; 3584073 [H]