Click here to switch to the map view.

The map label for this gene is gumB [C]

Identifier: 78048343

GI number: 78048343

Start: 3167456

End: 3168154

Strand: Reverse

Name: gumB [C]

Synonym: XCV2787

Alternate gene names: 78048343

Gene position: 3168154-3167456 (Counterclockwise)

Preceding gene: 78048344

Following gene: 78048342

Centisome position: 61.18

GC content: 61.09

Gene sequence:

>699_bases
ATGAAGAAACTGATCGGACGATTTTGCCAAGCGCTCAGCCTGGCGTTGATCTGCTCGATAACACTGGGCGCTTGCAGCAC
CGGTAAGGACATGGCGACCTCGTTGCCACTGCCTGACCCGCTCGCAATGTCCGCAGTGCAGCCCGAGTATCGGCTCTCGC
CAGGCGACCTGCTGCTGGTCAAGGTGTTCCAGATCGACGATCTGGAACGGCAGGTCCGTATCGATCAGAACGGCCACATT
TCGTTGCCGCTTATCGGCGACGTAAATGCGGCCGGCATGGGCGTCGGCGAGCTGGAAAAGATGGTGGCCGACCGGTACCG
CAACGGCTACCTGCAAAATCCGCAGGTGTCGGTGTTCGTGCAGGAATCCAACGGCCGTCGCGTCACCGTGACCGGAGCGG
TCGACGAGCCGGGCATTTATCCGGTGATCGGGGCCAACCTGACCTTGCAGCAAGCCATCGCGCAGGCCAAGGGCGTGAGC
ACGGTCGCCAGCCGCGGCAATGTCATCGTGTTCCGCATGGTCAATGGGCAAAAGATGCTCGCGCGGTTCGACCTGACCGA
AATCGAGAAGGGAACCAACCCCGATCCTGAGATTTACGGCGGCGACATCGTGGTGGTGTACCGCTCGGATGCGCGCGTGT
GGTTGCGCACCATGCTGGAACTGACTCCTCTTGTGATGGTGTGGCGCGCTTACCGATGA

Upstream 100 bases:

>100_bases
CCGGGATGAACCCTCTGTCGTACGTTCGTGCTGGCGTGTTTGGCCGGTTGAATGCTGCGCGAGCTCCTGTCCCACCCAAC
CGAGGCAGCCAGCCACACGC

Downstream 100 bases:

>100_bases
GCATGAATTCCGACAATCGTTCCTCTTCGTCGCAGCGTCACGGGCATCTCGAACTCGCCGATGTGGGGTTGCTCGACTAC
TGGCGCGCCCTGGTGTCGCA

Product: xanthan biosynthesis polysaccharide export protein GumB

Products: NA

Alternate protein names: Polysaccharide Biosynthesis/Export Protein; Polysaccharide Export Outer Membrane Protein; Polysaccharide Export Periplasmic Protein; Polysaccharide Export Protein EpsE; Periplasmic Polysaccharide Export Protein; Capsular Polysaccharide Export Protein; GumB Protein; Amylovoran Export Outer Membrane Protein AmsH; Polysaccharide Biosynthesis; Periplasmic Protein Involved In Polysaccharide Export; Polysaccharide Export Protein Outer Membrane; Capsule Polysaccharide Export Protein; Polysaccharide Export-Related Protein; Polysaccharide Biosynthesis/Export Lipoprotein; Exopolysaccharide Production Protein; Outer Membrane Protein Performing Polysaccharide Export; Polysaccharide Secretin Protein HfsD; Exopolysaccharide Biosynthesis/Export Protein; Polysaccharide Export System Protein; Polysaccharide Export Protein Epse; Xanthan Biosynthesis Polysaccharide Export Protein GumB; Outer Membrane Xanthan Exporter; Polysaccharide Biosynthesis Protein

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MKKLIGRFCQALSLALICSITLGACSTGKDMATSLPLPDPLAMSAVQPEYRLSPGDLLLVKVFQIDDLERQVRIDQNGHI
SLPLIGDVNAAGMGVGELEKMVADRYRNGYLQNPQVSVFVQESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVS
TVASRGNVIVFRMVNGQKMLARFDLTEIEKGTNPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR

Sequences:

>Translated_232_residues
MKKLIGRFCQALSLALICSITLGACSTGKDMATSLPLPDPLAMSAVQPEYRLSPGDLLLVKVFQIDDLERQVRIDQNGHI
SLPLIGDVNAAGMGVGELEKMVADRYRNGYLQNPQVSVFVQESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVS
TVASRGNVIVFRMVNGQKMLARFDLTEIEKGTNPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR
>Mature_232_residues
MKKLIGRFCQALSLALICSITLGACSTGKDMATSLPLPDPLAMSAVQPEYRLSPGDLLLVKVFQIDDLERQVRIDQNGHI
SLPLIGDVNAAGMGVGELEKMVADRYRNGYLQNPQVSVFVQESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVS
TVASRGNVIVFRMVNGQKMLARFDLTEIEKGTNPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR

Specific function: May Be Involved In Polysaccharide Transport. [C]

COG id: COG1596

COG function: function code M; Periplasmic protein involved in polysaccharide export

Gene ontology:

Cell location: Integral Membrane Protein. Outer Membrane [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 25407; Mature: 25407

Theoretical pI: Translated: 8.02; Mature: 8.02

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKLIGRFCQALSLALICSITLGACSTGKDMATSLPLPDPLAMSAVQPEYRLSPGDLLLV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCCCCCCCCCCEEEE
KVFQIDDLERQVRIDQNGHISLPLIGDVNAAGMGVGELEKMVADRYRNGYLQNPQVSVFV
EEEECCCCCHHEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
QESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKML
ECCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCCHHHHCCCCEEEEEEECCCEEE
ARFDLTEIEKGTNPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR
EECCHHHHHCCCCCCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKKLIGRFCQALSLALICSITLGACSTGKDMATSLPLPDPLAMSAVQPEYRLSPGDLLLV
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCCHHHHHCCCCCCCCCCCEEEE
KVFQIDDLERQVRIDQNGHISLPLIGDVNAAGMGVGELEKMVADRYRNGYLQNPQVSVFV
EEEECCCCCHHEEECCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCEEEEEE
QESNGRRVTVTGAVDEPGIYPVIGANLTLQQAIAQAKGVSTVASRGNVIVFRMVNGQKML
ECCCCCEEEEEECCCCCCCEEEECCCCHHHHHHHHHCCCHHHHCCCCEEEEEEECCCEEE
ARFDLTEIEKGTNPDPEIYGGDIVVVYRSDARVWLRTMLELTPLVMVWRAYR
EECCHHHHHCCCCCCCCEECCCEEEEEECCHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA