| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is aldH [H]
Identifier: 78048299
GI number: 78048299
Start: 3122763
End: 3124379
Strand: Reverse
Name: aldH [H]
Synonym: XCV2743
Alternate gene names: 78048299
Gene position: 3124379-3122763 (Counterclockwise)
Preceding gene: 78048300
Following gene: 78048298
Centisome position: 60.33
GC content: 69.51
Gene sequence:
>1617_bases ATGAACGAGACGAACCACTCCATTCCCGCGGCCGCAGCCGAGATCCTGCTGGCAGGGCAATGGCAAGCCAGCCGCGCCGC CACCGGCAGTTTCCGCGCTGCCGACCCGGCCACCGGCGAGCCGATCGGGCCGTACTTTCCGGTCAGTGGTGCGGACGATG TGGAAGCGGCCGTGGTTGCGGCGCAGTCAGTGGCGGCGGCGTTGGCGGCCGCACCGGTCGAGCGGATCGCGGCCTTTCTG GAAGGCTATGCCGACGCGCTGGATGCCGATGCCGAGACCCTGGTCGCGCTGGCGCATGCCGAGACGGCGTTACCGGCGCC CACACGCTTGCGCGGTAACGAACTGCCGCGCACCAGCGGCCAACTGCGGCAGGCCGCACAGGCCGTGCGCAGCTACAGCT GGACCCAGCCCATCATCGACAGCGCGGCAGACCTGCGTTCGCACCTGGCGCCACTGGGCAAACCGGTGCTGGTGTTCGGC CCGAACAACTTTCCGTTCGCGTTCAATGCAATTGCCGGCAGCGATTTCGCCTCGGCGATTGCCGCGCGCAACCCGGTCAT TGCCAAGGCGCATCCGTTGCATCCGGCCACCAGCCAGCGCATGGCGCAGCTCGCGCATCAGGCCTTGGTTGGGGCCGGTC TGCCTGCGGCGGCGGTGCAACTGCTGTATCACTTCGACACTGCCGTCGGCCTGCGCTTGGCGGGCGATGCGCGGCTGGGC GCGATCGGTTTCACTGGCAGCCGTGCCGGTGGGCTGGCACTGAAGGCGGCCGCAGACGCGGCGGGCGTGCCGTTTTATGC CGAGCTTTCCAGCGTCAACCCGGTCTTCCTGTTGCCGGGCGCGCTGGCCGAACGCGGCGACGCGCTTGCGCAGGAATTCT TCGCCTCCTGCACGCTGGGTAGCGGGCAGTTCTGCACCAACCCCGGTGTGGTGGTGGTGCCGCATGGCGCGGCTGGCGAG GCGTTCATTGCGGCCACCAAGGCGCATTTCGAAGCGGCCATGCCGATGGTGCTGTTCTCCGCCGCCGGTGTAGAAGGCGT GCAACGCGGTGTGGCGAGCCTGCGTGCCGCCGGCGCCAGCATGCTGGCCGGCGGACACACCGGCGAGGATGGCTACCGTT ATGCGCCGACCTTGTTGAGCGTGGATGCGCAAGCCTTTCTGGCCAACCCGCACGCCCTGCAGGCCGAAGCCTTCGGCCCG GTGAGCCTGCTGGTGCGCGCAGCCGATGTGGCGCAGATGGCACAGGTGGCTGCCGCGTTCGAAGGCAACCTGACCGGCAC GTTGTACCGCGCGGCCGACGGCAGCGACGATGCGGCGTGGCAGACCATTGCCCCGGTATTGCGCGCGCGGGTGGGGCGGT TGATCAACAGCAAGATGCCGACCGGCGTGGCCGTGAGCGCGGCGCAGAACCACGGCGGCCCGTTCCCGAGCACCGGGCAT CCGGGCTTCACGGCGGTGGGCATGCCCGGCGCCATCCGCCGTTTTGCCGCCTTGCACAGCTACGACGCGGTGCCCGATGC ACTGCTGCCTGCCGAACTGCGCCAGCGCAATCCGGGCGGCGTGGCACGTCTGGTCGATGGGCAATGGAGCACGGCCGATC TTGGAGCCGGCGCATGA
Upstream 100 bases:
>100_bases ATGCGGATGTGGCATCCAGTGCTGCATCCTCATCGTCTTTTTGGTCTGCCGCCAGCGCACCGAGCGCAGGTCCTGCCTCC CTGTCACCGAAGGTGCCGCA
Downstream 100 bases:
>100_bases GCAGCCAGATCGGCGGGCTGTCGCTTGCGCAAGCGCGTGCGCAACTGACGCCGTGGACACAATGCGCCGCGCCGATCGCC ACGGACGAATACGAGCGCCG
Product: putative ketoglutarate semialdehyde dehydrogenase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 538; Mature: 538
Protein sequence:
>538_residues MNETNHSIPAAAAEILLAGQWQASRAATGSFRAADPATGEPIGPYFPVSGADDVEAAVVAAQSVAAALAAAPVERIAAFL EGYADALDADAETLVALAHAETALPAPTRLRGNELPRTSGQLRQAAQAVRSYSWTQPIIDSAADLRSHLAPLGKPVLVFG PNNFPFAFNAIAGSDFASAIAARNPVIAKAHPLHPATSQRMAQLAHQALVGAGLPAAAVQLLYHFDTAVGLRLAGDARLG AIGFTGSRAGGLALKAAADAAGVPFYAELSSVNPVFLLPGALAERGDALAQEFFASCTLGSGQFCTNPGVVVVPHGAAGE AFIAATKAHFEAAMPMVLFSAAGVEGVQRGVASLRAAGASMLAGGHTGEDGYRYAPTLLSVDAQAFLANPHALQAEAFGP VSLLVRAADVAQMAQVAAAFEGNLTGTLYRAADGSDDAAWQTIAPVLRARVGRLINSKMPTGVAVSAAQNHGGPFPSTGH PGFTAVGMPGAIRRFAALHSYDAVPDALLPAELRQRNPGGVARLVDGQWSTADLGAGA
Sequences:
>Translated_538_residues MNETNHSIPAAAAEILLAGQWQASRAATGSFRAADPATGEPIGPYFPVSGADDVEAAVVAAQSVAAALAAAPVERIAAFL EGYADALDADAETLVALAHAETALPAPTRLRGNELPRTSGQLRQAAQAVRSYSWTQPIIDSAADLRSHLAPLGKPVLVFG PNNFPFAFNAIAGSDFASAIAARNPVIAKAHPLHPATSQRMAQLAHQALVGAGLPAAAVQLLYHFDTAVGLRLAGDARLG AIGFTGSRAGGLALKAAADAAGVPFYAELSSVNPVFLLPGALAERGDALAQEFFASCTLGSGQFCTNPGVVVVPHGAAGE AFIAATKAHFEAAMPMVLFSAAGVEGVQRGVASLRAAGASMLAGGHTGEDGYRYAPTLLSVDAQAFLANPHALQAEAFGP VSLLVRAADVAQMAQVAAAFEGNLTGTLYRAADGSDDAAWQTIAPVLRARVGRLINSKMPTGVAVSAAQNHGGPFPSTGH PGFTAVGMPGAIRRFAALHSYDAVPDALLPAELRQRNPGGVARLVDGQWSTADLGAGA >Mature_538_residues MNETNHSIPAAAAEILLAGQWQASRAATGSFRAADPATGEPIGPYFPVSGADDVEAAVVAAQSVAAALAAAPVERIAAFL EGYADALDADAETLVALAHAETALPAPTRLRGNELPRTSGQLRQAAQAVRSYSWTQPIIDSAADLRSHLAPLGKPVLVFG PNNFPFAFNAIAGSDFASAIAARNPVIAKAHPLHPATSQRMAQLAHQALVGAGLPAAAVQLLYHFDTAVGLRLAGDARLG AIGFTGSRAGGLALKAAADAAGVPFYAELSSVNPVFLLPGALAERGDALAQEFFASCTLGSGQFCTNPGVVVVPHGAAGE AFIAATKAHFEAAMPMVLFSAAGVEGVQRGVASLRAAGASMLAGGHTGEDGYRYAPTLLSVDAQAFLANPHALQAEAFGP VSLLVRAADVAQMAQVAAAFEGNLTGTLYRAADGSDDAAWQTIAPVLRARVGRLINSKMPTGVAVSAAQNHGGPFPSTGH PGFTAVGMPGAIRRFAALHSYDAVPDALLPAELRQRNPGGVARLVDGQWSTADLGAGA
Specific function: Catalyzes the oxidation of long-chain aliphatic aldehydes to acids. May be implicated in controlling luminescence as it catalyzes the oxidation of the fatty aldehyde substrate for the light-emitting reaction [H]
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the aldehyde dehydrogenase family [H]
Homologues:
Organism=Escherichia coli, GI87082295, Length=405, Percent_Identity=25.9259259259259, Blast_Score=74, Evalue=3e-14, Organism=Escherichia coli, GI1787250, Length=394, Percent_Identity=27.4111675126904, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI1787558, Length=423, Percent_Identity=26.241134751773, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016161 - InterPro: IPR016163 - InterPro: IPR016162 - InterPro: IPR015590 [H]
Pfam domain/function: PF00171 Aldedh [H]
EC number: =1.2.1.4 [H]
Molecular weight: Translated: 54635; Mature: 54635
Theoretical pI: Translated: 6.27; Mature: 6.27
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNETNHSIPAAAAEILLAGQWQASRAATGSFRAADPATGEPIGPYFPVSGADDVEAAVVA CCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AQSVAAALAAAPVERIAAFLEGYADALDADAETLVALAHAETALPAPTRLRGNELPRTSG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH QLRQAAQAVRSYSWTQPIIDSAADLRSHLAPLGKPVLVFGPNNFPFAFNAIAGSDFASAI HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHH AARNPVIAKAHPLHPATSQRMAQLAHQALVGAGLPAAAVQLLYHFDTAVGLRLAGDARLG HHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEECCCCEE AIGFTGSRAGGLALKAAADAAGVPFYAELSSVNPVFLLPGALAERGDALAQEFFASCTLG EEECCCCCCCCEEEEECCCCCCCCEEEHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCC SGQFCTNPGVVVVPHGAAGEAFIAATKAHFEAAMPMVLFSAAGVEGVQRGVASLRAAGAS CCCEECCCCEEEEECCCCCCHHEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH MLAGGHTGEDGYRYAPTLLSVDAQAFLANPHALQAEAFGPVSLLVRAADVAQMAQVAAAF HHCCCCCCCCCCEECCHHEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EGNLTGTLYRAADGSDDAAWQTIAPVLRARVGRLINSKMPTGVAVSAAQNHGGPFPSTGH CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCCCC PGFTAVGMPGAIRRFAALHSYDAVPDALLPAELRQRNPGGVARLVDGQWSTADLGAGA CCEEEECCCHHHHHHHHHHHCCCCCCHHCCHHHHCCCCCCEEEEECCCCCCCCCCCCC >Mature Secondary Structure MNETNHSIPAAAAEILLAGQWQASRAATGSFRAADPATGEPIGPYFPVSGADDVEAAVVA CCCCCCCCHHHHHHHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHH AQSVAAALAAAPVERIAAFLEGYADALDADAETLVALAHAETALPAPTRLRGNELPRTSG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCHH QLRQAAQAVRSYSWTQPIIDSAADLRSHLAPLGKPVLVFGPNNFPFAFNAIAGSDFASAI HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEECCCCHHHHHH AARNPVIAKAHPLHPATSQRMAQLAHQALVGAGLPAAAVQLLYHFDTAVGLRLAGDARLG HHCCCCEECCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCEEEECCCCEE AIGFTGSRAGGLALKAAADAAGVPFYAELSSVNPVFLLPGALAERGDALAQEFFASCTLG EEECCCCCCCCEEEEECCCCCCCCEEEHHCCCCCEEEECCHHHHHHHHHHHHHHHHHCCC SGQFCTNPGVVVVPHGAAGEAFIAATKAHFEAAMPMVLFSAAGVEGVQRGVASLRAAGAS CCCEECCCCEEEEECCCCCCHHEEHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCHH MLAGGHTGEDGYRYAPTLLSVDAQAFLANPHALQAEAFGPVSLLVRAADVAQMAQVAAAF HHCCCCCCCCCCEECCHHEECCHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH EGNLTGTLYRAADGSDDAAWQTIAPVLRARVGRLINSKMPTGVAVSAAQNHGGPFPSTGH CCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCCCCCC PGFTAVGMPGAIRRFAALHSYDAVPDALLPAELRQRNPGGVARLVDGQWSTADLGAGA CCEEEECCCHHHHHHHHHHHCCCCCCHHCCHHHHCCCCCCEEEEECCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8527447; 10903148 [H]