| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is lktB [H]
Identifier: 78047127
GI number: 78047127
Start: 1771776
End: 1773464
Strand: Reverse
Name: lktB [H]
Synonym: XCV1571
Alternate gene names: 78047127
Gene position: 1773464-1771776 (Counterclockwise)
Preceding gene: 78047128
Following gene: 78047126
Centisome position: 34.25
GC content: 65.42
Gene sequence:
>1689_bases ATGGCGGCCAAGCGGATTGGATGGCGGGAAGCGGCGAGCTGGCTGACGGAAGTTGTTGGCCCGGACATGCCGTATGTGCG CCTGACCCTGGTGTACGGCGTTGCGATCAGCCTGCTGTCGCTGGCCACGCCGATCTCGGTGCAGTTGCTGATCAACAGCG TTGCCAACACCGCGCTGCCCACGCCGCTGTGGACCTTGTCCGGCCTGCTGCTGGGCCTGCTGCTGCTGGTGGCGGCACTG AGCGCGATGCGGGTGTGGGTGATGGCGCTGTTCGAACGTCGCCTGTTCGCACGCGTGGTGGCGGAAATCACCGTGCGCGC GGTACATGCGCAAAATCCGTTCTTCGCCGACCAGAACCGCGGCGATGTATTCAACCGCTACTTCGATCTGGTGGTGGTGC AAAAGGCAGTGCCCAGCCTGGCGGTCGGTGCGTTCACCATCGTGCTGCAGTCGGCGGTCGGCTTGATCGTCACTAGCTTC TATCACCCGTTTTTCCTCGGCTTCAACGCGCTGCTGCTGCTGACCATCTTCTCGATCTGGATGATCTGGTCGCGCGGTTC GATCCGCTCGGCGGTCGAACTGAGCCAGGCCAAACACAACGCCGCGCATTGGCTGGAAAGCGTCGGCGGCTCCAACGGGT TCTATAAATCCAGCCGCCATCTCAACTTCGCCATGGATCGCTCGGAAAAGGTGACCGCCGACTATGTCGACCGGCATCGG CGCCATTTCCGCTACACCTTCACCCAGACGCTGGCATTCCTGCTCACCTATGCAGTGGCCAGCGCGGCGCTGCTGGCGCT GGGCGGCAGCCTGATCCTGCGCGGCGAGCTGTCGATCGGCCAGCTGGTGGCAGCCGAACTGATCCTGAGCGCAGTGTTCT ACGGCATTGCACAGCTGGGCAGCTACCTGGACACGTTCTACGACCTGGTGGCCAGCGCGGAGGAGTTGTCGCTGCTGTAC GCCATCCCCCAGGAACGCCCGGTGCTTGCCGCCGGCGAGGCGCCGCGCAACAGCGGGGTACGCCTGGATGGGGTGGTGAT CGAGGGCGCGCGTTTCGATTTCGCGCTGGAAGCCGGCGAGCAGCTGGTCACGCTGGCCGATGGCGGCGCCGAGCGCCTGC TGGCCATGGTGCTCAAGCGCCACGTCGTTCCCGACCGCGGGCTGGTGATGGTGGGTGGTGCGGACATGGCCACGTTCGAT ATGTACCTGCTGCGTTCGGAAGTCACCGTGCTCGACCGCCCGACCATCGTGGAGGTCACCATTCGCGAATACCTGGCAAT GGCCTCGGCCGATGTGACGTCCGAAGCGATGCTGCAAGCCATCGATACGGTGGGCCTGCGCGCGCGCATCGCCGCGTTAC CGCAAGGCCTGGACACCCGGCTTGCCGCCTCCGGGTTCCCGCTGTGGATTGGCGAAGTCATGGCGCTGAAGCTGGCCAAT GCACTGTTGGTGCGCCCGCGCGTGCTGATGCTGTCGCAGCTGTACGACCTGATCCCGGCCGAGCGCCTGACCCAGGTCCT GCGACGCTTGAAGGATGCAGGAACCACGGTGCTGCTGTGCACCGGGCGGCCGGAGGACATCACCCTGGATGGCTGGTTCC GGCTGGAGCCGGAGCGCCAGCAACGCTACGCCACACGCGCCGAGTTGATCGCATCCACGCAGGAGGTGCCGCATGCCGCA CGCCCCTGA
Upstream 100 bases:
>100_bases TGGCTGCATAGGAAAATCCTATGCGGCACATAAGCGCGATGGCCTTGTTTGCGGGCCGGCAACTCGTCAATGCTTCACTG AACTCATCAACGGATATCGA
Downstream 100 bases:
>100_bases TCGCATGGCGCATTTCCCGACCCTGGCGGCAATGCGTCCGCCCAGCATCGCCAAGGCGGTCGCCTGGATGCTGTTGATCG GCATCGGCATCGCCGCGGCG
Product: ABC transporter permease and ATP-binding protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 562; Mature: 561
Protein sequence:
>562_residues MAAKRIGWREAASWLTEVVGPDMPYVRLTLVYGVAISLLSLATPISVQLLINSVANTALPTPLWTLSGLLLGLLLLVAAL SAMRVWVMALFERRLFARVVAEITVRAVHAQNPFFADQNRGDVFNRYFDLVVVQKAVPSLAVGAFTIVLQSAVGLIVTSF YHPFFLGFNALLLLTIFSIWMIWSRGSIRSAVELSQAKHNAAHWLESVGGSNGFYKSSRHLNFAMDRSEKVTADYVDRHR RHFRYTFTQTLAFLLTYAVASAALLALGGSLILRGELSIGQLVAAELILSAVFYGIAQLGSYLDTFYDLVASAEELSLLY AIPQERPVLAAGEAPRNSGVRLDGVVIEGARFDFALEAGEQLVTLADGGAERLLAMVLKRHVVPDRGLVMVGGADMATFD MYLLRSEVTVLDRPTIVEVTIREYLAMASADVTSEAMLQAIDTVGLRARIAALPQGLDTRLAASGFPLWIGEVMALKLAN ALLVRPRVLMLSQLYDLIPAERLTQVLRRLKDAGTTVLLCTGRPEDITLDGWFRLEPERQQRYATRAELIASTQEVPHAA RP
Sequences:
>Translated_562_residues MAAKRIGWREAASWLTEVVGPDMPYVRLTLVYGVAISLLSLATPISVQLLINSVANTALPTPLWTLSGLLLGLLLLVAAL SAMRVWVMALFERRLFARVVAEITVRAVHAQNPFFADQNRGDVFNRYFDLVVVQKAVPSLAVGAFTIVLQSAVGLIVTSF YHPFFLGFNALLLLTIFSIWMIWSRGSIRSAVELSQAKHNAAHWLESVGGSNGFYKSSRHLNFAMDRSEKVTADYVDRHR RHFRYTFTQTLAFLLTYAVASAALLALGGSLILRGELSIGQLVAAELILSAVFYGIAQLGSYLDTFYDLVASAEELSLLY AIPQERPVLAAGEAPRNSGVRLDGVVIEGARFDFALEAGEQLVTLADGGAERLLAMVLKRHVVPDRGLVMVGGADMATFD MYLLRSEVTVLDRPTIVEVTIREYLAMASADVTSEAMLQAIDTVGLRARIAALPQGLDTRLAASGFPLWIGEVMALKLAN ALLVRPRVLMLSQLYDLIPAERLTQVLRRLKDAGTTVLLCTGRPEDITLDGWFRLEPERQQRYATRAELIASTQEVPHAA RP >Mature_561_residues AAKRIGWREAASWLTEVVGPDMPYVRLTLVYGVAISLLSLATPISVQLLINSVANTALPTPLWTLSGLLLGLLLLVAALS AMRVWVMALFERRLFARVVAEITVRAVHAQNPFFADQNRGDVFNRYFDLVVVQKAVPSLAVGAFTIVLQSAVGLIVTSFY HPFFLGFNALLLLTIFSIWMIWSRGSIRSAVELSQAKHNAAHWLESVGGSNGFYKSSRHLNFAMDRSEKVTADYVDRHRR HFRYTFTQTLAFLLTYAVASAALLALGGSLILRGELSIGQLVAAELILSAVFYGIAQLGSYLDTFYDLVASAEELSLLYA IPQERPVLAAGEAPRNSGVRLDGVVIEGARFDFALEAGEQLVTLADGGAERLLAMVLKRHVVPDRGLVMVGGADMATFDM YLLRSEVTVLDRPTIVEVTIREYLAMASADVTSEAMLQAIDTVGLRARIAALPQGLDTRLAASGFPLWIGEVMALKLANA LLVRPRVLMLSQLYDLIPAERLTQVLRRLKDAGTTVLLCTGRPEDITLDGWFRLEPERQQRYATRAELIASTQEVPHAAR P
Specific function: Part of the ABC transporter complex LktBD involved in leukotoxin export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (Probable) [H]
COG id: COG2274
COG function: function code V; ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain
Gene ontology:
Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 peptidase C39 domain [H]
Homologues:
Organism=Homo sapiens, GI171184400, Length=528, Percent_Identity=23.8636363636364, Blast_Score=77, Evalue=3e-14, Organism=Homo sapiens, GI42741659, Length=302, Percent_Identity=23.5099337748344, Blast_Score=69, Evalue=1e-11, Organism=Homo sapiens, GI9961250, Length=303, Percent_Identity=21.4521452145215, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI4505771, Length=303, Percent_Identity=21.4521452145215, Blast_Score=66, Evalue=7e-11, Organism=Homo sapiens, GI9961252, Length=303, Percent_Identity=21.4521452145215, Blast_Score=66, Evalue=7e-11, Organism=Escherichia coli, GI1786653, Length=525, Percent_Identity=21.9047619047619, Blast_Score=65, Evalue=1e-11, Organism=Caenorhabditis elegans, GI193202349, Length=325, Percent_Identity=21.2307692307692, Blast_Score=71, Evalue=1e-12, Organism=Saccharomyces cerevisiae, GI6323959, Length=376, Percent_Identity=23.936170212766, Blast_Score=82, Evalue=2e-16,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR017940 - InterPro: IPR001140 - InterPro: IPR011527 - InterPro: IPR003593 - InterPro: IPR010132 - InterPro: IPR005074 [H]
Pfam domain/function: PF00664 ABC_membrane; PF00005 ABC_tran; PF03412 Peptidase_C39 [H]
EC number: =3.6.3.43 [H]
Molecular weight: Translated: 61698; Mature: 61567
Theoretical pI: Translated: 7.82; Mature: 7.82
Prosite motif: PS50929 ABC_TM1F
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAAKRIGWREAASWLTEVVGPDMPYVRLTLVYGVAISLLSLATPISVQLLINSVANTALP CCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC TPLWTLSGLLLGLLLLVAALSAMRVWVMALFERRLFARVVAEITVRAVHAQNPFFADQNR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GDVFNRYFDLVVVQKAVPSLAVGAFTIVLQSAVGLIVTSFYHPFFLGFNALLLLTIFSIW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MIWSRGSIRSAVELSQAKHNAAHWLESVGGSNGFYKSSRHLNFAMDRSEKVTADYVDRHR HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH RHFRYTFTQTLAFLLTYAVASAALLALGGSLILRGELSIGQLVAAELILSAVFYGIAQLG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH SYLDTFYDLVASAEELSLLYAIPQERPVLAAGEAPRNSGVRLDGVVIEGARFDFALEAGE HHHHHHHHHHHCHHHHHEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCEEECCCC QLVTLADGGAERLLAMVLKRHVVPDRGLVMVGGADMATFDMYLLRSEVTVLDRPTIVEVT EEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCHHEECCCCEEEHH IREYLAMASADVTSEAMLQAIDTVGLRARIAALPQGLDTRLAASGFPLWIGEVMALKLAN HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHH ALLVRPRVLMLSQLYDLIPAERLTQVLRRLKDAGTTVLLCTGRPEDITLDGWFRLEPERQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCEEEECCHHH QRYATRAELIASTQEVPHAARP HHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure AAKRIGWREAASWLTEVVGPDMPYVRLTLVYGVAISLLSLATPISVQLLINSVANTALP CCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCC TPLWTLSGLLLGLLLLVAALSAMRVWVMALFERRLFARVVAEITVRAVHAQNPFFADQNR CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC GDVFNRYFDLVVVQKAVPSLAVGAFTIVLQSAVGLIVTSFYHPFFLGFNALLLLTIFSIW CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH MIWSRGSIRSAVELSQAKHNAAHWLESVGGSNGFYKSSRHLNFAMDRSEKVTADYVDRHR HHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHH RHFRYTFTQTLAFLLTYAVASAALLALGGSLILRGELSIGQLVAAELILSAVFYGIAQLG HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHH SYLDTFYDLVASAEELSLLYAIPQERPVLAAGEAPRNSGVRLDGVVIEGARFDFALEAGE HHHHHHHHHHHCHHHHHEEEECCCCCCEEECCCCCCCCCCEEEEEEEECCCCCEEECCCC QLVTLADGGAERLLAMVLKRHVVPDRGLVMVGGADMATFDMYLLRSEVTVLDRPTIVEVT EEEEECCCCHHHHHHHHHHHHCCCCCCEEEECCCCHHHHHHHHHHHCHHEECCCCEEEHH IREYLAMASADVTSEAMLQAIDTVGLRARIAALPQGLDTRLAASGFPLWIGEVMALKLAN HHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHH ALLVRPRVLMLSQLYDLIPAERLTQVLRRLKDAGTTVLLCTGRPEDITLDGWFRLEPERQ HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCEEEEEECCCCCEEECCEEEECCHHH QRYATRAELIASTQEVPHAARP HHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 11741868 [H]