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The map label for this gene is yjjV [H]

Identifier: 78047082

GI number: 78047082

Start: 1720569

End: 1721336

Strand: Reverse

Name: yjjV [H]

Synonym: XCV1526

Alternate gene names: 78047082

Gene position: 1721336-1720569 (Counterclockwise)

Preceding gene: 78047083

Following gene: 78047080

Centisome position: 33.24

GC content: 66.41

Gene sequence:

>768_bases
ATGCAGTTGATCGACAGCCATTGCCATCTGGATGCAGGCGAATTCGACCACGACCGCGCGGCGGTGATCGCGCGCGCGCG
CGCTGCGGGCGTCATGCAGCAAGTGGTACCGGCGATCACTGCTGCCAGCTGGCCGGGCCTGCGTGCGGTCTGCGATCAGG
CACCTGGTCTCTACCCCGCTTATGGCCTGCACCCACTGTTTCTGGACCAGCACCGCCCCGAACACCTGGAGCTGCTGGCC
GAGTGGATCGAACGCGAGCGGCCCTGCGCGATCGGCGAATGCGGCCTGGACTTTTTCGTCGACGGATTGGATGCGCAGGC
GCAGCGCGCCTATTTCGATGCTCAGTTGCAGTTGGCCAAGCGCTTCGACCTGCCGCTGATCGTGCATGCCCGCCGCGCCA
CCGAAGAGGTCATCGCCCGTATCAAGGCGATAGGTGGCCTGCGCGGCGTAGTGCACAGCTTTGCCGGCAGCCCCGAGCAG
GCGCAGCAGTTGTGGAAACTGGATTTCATGATCGGCCTGGGCGGCCCGGTGACCTACCCGCGTGCCAATCGCTTGCGAAG
GCTGGTCGCCAGCATGCCGCTGCAGCACCTGCTGCTGGAAACCGACGCGCCGGATCAGCCTGACGCCGGCAACCGCGGCC
AACGCAACGAGCCGGCGTATCTGCGCACGGTATTGGACTGCATCGCCCAGCTCCGCGGGCAAGACCCTGCGCACATTGCC
GCGCTCACGTCGGCCAACGCACGCAACCTGTTCGGCCTACGGCGCTGA

Upstream 100 bases:

>100_bases
TCCCGTTCCTGGACGAAGTGCTGTTCGGCCTGACCACGCTGCTGCTGGCCAACTGGAAAACCCGCAAGGCGCCGATGCCG
GCACCGGCGCGCCGCGACTG

Downstream 100 bases:

>100_bases
GCGCAGCGTACGCATCAGCGCGAGCGCCCGGTCAGCACGACAGCGCGCAGGCAACATCACGACGCCGCAACCGCCTCGGC
TGCCGGCGCCGCGGCCTTAG

Product: putative TatD related DNase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 255

Protein sequence:

>255_residues
MQLIDSHCHLDAGEFDHDRAAVIARARAAGVMQQVVPAITAASWPGLRAVCDQAPGLYPAYGLHPLFLDQHRPEHLELLA
EWIERERPCAIGECGLDFFVDGLDAQAQRAYFDAQLQLAKRFDLPLIVHARRATEEVIARIKAIGGLRGVVHSFAGSPEQ
AQQLWKLDFMIGLGGPVTYPRANRLRRLVASMPLQHLLLETDAPDQPDAGNRGQRNEPAYLRTVLDCIAQLRGQDPAHIA
ALTSANARNLFGLRR

Sequences:

>Translated_255_residues
MQLIDSHCHLDAGEFDHDRAAVIARARAAGVMQQVVPAITAASWPGLRAVCDQAPGLYPAYGLHPLFLDQHRPEHLELLA
EWIERERPCAIGECGLDFFVDGLDAQAQRAYFDAQLQLAKRFDLPLIVHARRATEEVIARIKAIGGLRGVVHSFAGSPEQ
AQQLWKLDFMIGLGGPVTYPRANRLRRLVASMPLQHLLLETDAPDQPDAGNRGQRNEPAYLRTVLDCIAQLRGQDPAHIA
ALTSANARNLFGLRR
>Mature_255_residues
MQLIDSHCHLDAGEFDHDRAAVIARARAAGVMQQVVPAITAASWPGLRAVCDQAPGLYPAYGLHPLFLDQHRPEHLELLA
EWIERERPCAIGECGLDFFVDGLDAQAQRAYFDAQLQLAKRFDLPLIVHARRATEEVIARIKAIGGLRGVVHSFAGSPEQ
AQQLWKLDFMIGLGGPVTYPRANRLRRLVASMPLQHLLLETDAPDQPDAGNRGQRNEPAYLRTVLDCIAQLRGQDPAHIA
ALTSANARNLFGLRR

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=265, Percent_Identity=30.5660377358491, Blast_Score=103, Evalue=2e-22,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=30.9433962264151, Blast_Score=100, Evalue=2e-21,
Organism=Homo sapiens, GI226061853, Length=272, Percent_Identity=30.5147058823529, Blast_Score=99, Evalue=4e-21,
Organism=Homo sapiens, GI226061614, Length=254, Percent_Identity=29.5275590551181, Blast_Score=95, Evalue=6e-20,
Organism=Homo sapiens, GI14042943, Length=270, Percent_Identity=27.7777777777778, Blast_Score=89, Evalue=3e-18,
Organism=Homo sapiens, GI225903439, Length=231, Percent_Identity=29.4372294372294, Blast_Score=87, Evalue=1e-17,
Organism=Homo sapiens, GI226061595, Length=225, Percent_Identity=30.6666666666667, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI225903424, Length=225, Percent_Identity=25.3333333333333, Blast_Score=66, Evalue=4e-11,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=40.7843137254902, Blast_Score=181, Evalue=3e-47,
Organism=Escherichia coli, GI1787342, Length=258, Percent_Identity=32.5581395348837, Blast_Score=125, Evalue=4e-30,
Organism=Escherichia coli, GI48994985, Length=260, Percent_Identity=32.6923076923077, Blast_Score=112, Evalue=3e-26,
Organism=Caenorhabditis elegans, GI71980746, Length=263, Percent_Identity=28.5171102661597, Blast_Score=108, Evalue=2e-24,
Organism=Caenorhabditis elegans, GI17559024, Length=284, Percent_Identity=27.4647887323944, Blast_Score=105, Evalue=3e-23,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=30.0699300699301, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24586117, Length=283, Percent_Identity=27.9151943462898, Blast_Score=86, Evalue=2e-17,
Organism=Drosophila melanogaster, GI221330018, Length=283, Percent_Identity=27.9151943462898, Blast_Score=86, Evalue=2e-17,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.- [C]

Molecular weight: Translated: 28182; Mature: 28182

Theoretical pI: Translated: 7.05; Mature: 7.05

Prosite motif: PS01137 TATD_1 ; PS01090 TATD_2 ; PS01091 TATD_3

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQLIDSHCHLDAGEFDHDRAAVIARARAAGVMQQVVPAITAASWPGLRAVCDQAPGLYPA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
YGLHPLFLDQHRPEHLELLAEWIERERPCAIGECGLDFFVDGLDAQAQRAYFDAQLQLAK
CCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
RFDLPLIVHARRATEEVIARIKAIGGLRGVVHSFAGSPEQAQQLWKLDFMIGLGGPVTYP
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCC
RANRLRRLVASMPLQHLLLETDAPDQPDAGNRGQRNEPAYLRTVLDCIAQLRGQDPAHIA
HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHEE
ALTSANARNLFGLRR
HECCCCCHHHCCCCC
>Mature Secondary Structure
MQLIDSHCHLDAGEFDHDRAAVIARARAAGVMQQVVPAITAASWPGLRAVCDQAPGLYPA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCCC
YGLHPLFLDQHRPEHLELLAEWIERERPCAIGECGLDFFVDGLDAQAQRAYFDAQLQLAK
CCCCHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCHHHHHHHHHHHHHHHH
RFDLPLIVHARRATEEVIARIKAIGGLRGVVHSFAGSPEQAQQLWKLDFMIGLGGPVTYP
HCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHEECCCCCCCC
RANRLRRLVASMPLQHLLLETDAPDQPDAGNRGQRNEPAYLRTVLDCIAQLRGQDPAHIA
HHHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHEE
ALTSANARNLFGLRR
HECCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]