Click here to switch to the map view.

The map label for this gene is 78047080

Identifier: 78047080

GI number: 78047080

Start: 1719179

End: 1719607

Strand: Reverse

Name: 78047080

Synonym: XCV1524

Alternate gene names: NA

Gene position: 1719607-1719179 (Counterclockwise)

Preceding gene: 78047082

Following gene: 78047079

Centisome position: 33.21

GC content: 68.07

Gene sequence:

>429_bases
ATGCACGCCCCGCCTCCCACCCAATCCCGCGCGGCCCGCTACGCCTTCATGCTGGTGCTGGGCCTGCTGATCGGCCTGGT
CGCCACGGTCATGGTGGCCAACGCACTACAGGCGCGACGCGACCCGGTGCCCGACAGCCTGATGCAGATCATGGCCTACC
AATTACGCGCATTGCGACCGGGCGAAGGCGTCGCCTGCGCGCCGGCGCAGCAACAGCGACGGCTGCAATCGTTGCGCCTG
CTGGCCGACGAAGTCGAGCCGGCCTTCCCTGCAATTGGCGAGGACCGCCGCTTCGGCGAGCACGCACAGGCATTGCGTGC
CGCGCTGGATCAGGCCCAGGGCGTAACGCTGACCGATTGCAGTCAGCTGGGCCAACTCCACACCCGCATCTCCGATGCCT
GCGAGGCCTGCCATCGCGACTTTCGCTGA

Upstream 100 bases:

>100_bases
AAGCGTTCACGCCATTGTGCTTTCATCGGCCTATTTTACGCGCCCCGTCCAGGGCGCGCCCACGCTGCCGCAACGAACGT
TGCGTCCCAGGAGCCACCTC

Downstream 100 bases:

>100_bases
GGTTGGATGAATACGACGCTCGGGTTTCGTTAAGCCTGCAGTGTCGCAGTTGGCAGGCCGTTCACCTGGACCATCACAGG
ATGGCGTCGCCGCGGCCCCG

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 142; Mature: 142

Protein sequence:

>142_residues
MHAPPPTQSRAARYAFMLVLGLLIGLVATVMVANALQARRDPVPDSLMQIMAYQLRALRPGEGVACAPAQQQRRLQSLRL
LADEVEPAFPAIGEDRRFGEHAQALRAALDQAQGVTLTDCSQLGQLHTRISDACEACHRDFR

Sequences:

>Translated_142_residues
MHAPPPTQSRAARYAFMLVLGLLIGLVATVMVANALQARRDPVPDSLMQIMAYQLRALRPGEGVACAPAQQQRRLQSLRL
LADEVEPAFPAIGEDRRFGEHAQALRAALDQAQGVTLTDCSQLGQLHTRISDACEACHRDFR
>Mature_142_residues
MHAPPPTQSRAARYAFMLVLGLLIGLVATVMVANALQARRDPVPDSLMQIMAYQLRALRPGEGVACAPAQQQRRLQSLRL
LADEVEPAFPAIGEDRRFGEHAQALRAALDQAQGVTLTDCSQLGQLHTRISDACEACHRDFR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 15557; Mature: 15557

Theoretical pI: Translated: 7.98; Mature: 7.98

Prosite motif: PS51009 CYTCII

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.8 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
2.8 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHAPPPTQSRAARYAFMLVLGLLIGLVATVMVANALQARRDPVPDSLMQIMAYQLRALRP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
GEGVACAPAQQQRRLQSLRLLADEVEPAFPAIGEDRRFGEHAQALRAALDQAQGVTLTDC
CCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
SQLGQLHTRISDACEACHRDFR
HHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHAPPPTQSRAARYAFMLVLGLLIGLVATVMVANALQARRDPVPDSLMQIMAYQLRALRP
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCC
GEGVACAPAQQQRRLQSLRLLADEVEPAFPAIGEDRRFGEHAQALRAALDQAQGVTLTDC
CCCCEECCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHH
SQLGQLHTRISDACEACHRDFR
HHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA