| Definition | Xanthomonas campestris pv. vesicatoria str. 85-10 chromosome, complete genome. |
|---|---|
| Accession | NC_007508 |
| Length | 5,178,466 |
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The map label for this gene is papC [H]
Identifier: 78047038
GI number: 78047038
Start: 1665484
End: 1667898
Strand: Reverse
Name: papC [H]
Synonym: XCV1482
Alternate gene names: 78047038
Gene position: 1667898-1665484 (Counterclockwise)
Preceding gene: 78047039
Following gene: 78047037
Centisome position: 32.21
GC content: 68.03
Gene sequence:
>2415_bases GTGAGGCTGACGAACGTACCTTGTTGGCCGCGCCGACGGCGCCTTGATGCGGCGCGGCTGGCGATGACGCTCCTTGCGAC CGCCAGTTGCCTGGGCAGCGCCGCAGCCGGCGATCTGGCCGATGTGACGTCGCTTCCCGATCAGCCGCCACCCAGCGCCA CGCCACAGCCGCAAACGCTGTATCTGGACGTGACCTTGAACCAGGCCGACCGCGGCCTGGCACCATTCGAACTGGTCGAC GGGCGGCTACGCGGCTCGGTGGAAACCCTGCGCAAACTCGGCTTCATCCTGGCCGACCGCGTGCCTGGCGAATTGGTCGA TCTGGACCGCCTGCCCGACGTGGAAGTGCGCTACGACGCGGCGCTGCAGCGGCTGGCGCTGCAGGCGCCGCTGGCGCAGC TGTCGTTGTCCACCACGGTGCTCAAAGCCGAAGAAGTGGCCCCGCCCAGCGCCACTGCATCGCCCGGCATGCTGCTCAAT TACGACCTGTATGCCACCCGCAATGCCGGCGTCAGCAGCGCGTCGCTGGCCACCGAAGTGCGCGCGTTCGGCATCGGGCG CGGCATGGTCGATACCACCGCGGTCTTCCTGGCCTACGATCGCCCCCAGGACAAACGCTGGCGCAGCGAAGCGGTGCGTC TGGACAGTGCCTGGCAGATGGATTTCCCGGACAGCGCCACCAGCCTCAGCGTGGGCGATTTCTATAGCGGCTTTGTCGAC TGGAGCCGCTCGATCCGCCTGGGCGGCGTGCAGATCGGCCGCAATTACGCCTTGCAACCGTATCGGGTGCTGACGCCGAC GCCGAGCTTTCTCGGCGAAGCGGCAGTGCCTTCCACCGTTGAGCTGTATGTGGACGGCTTGCGCCAGTGCAGCGGCCAGG TGCCGGCCGGCCCGTTTCAGCTGGCCGCGCAACCGGGCATCAGCGGCACCGGCCAGGCGCAGATCGTGGTGACCGATGCG TTCGGACGCGTGCGTCGGCTGGATTTCGCGTTCTATGGCACACCGCAGTTGCTGGCGCGCGGCATTTCCGAATGGTCGGC CGGCATCGGCCATCTGCGCCGCGACTACGGCGTGCGCTCGTTTTCCTACGACCGACGCCGTGTGGCCAGCGCCACCTTTC GCAAAGGCCTGCGCGACGATTTCACGATCGAAGCGCATGCCGAAACTGGCGGCGGCGTGATCAACGCAGGCGCAGGCGGC GTGTGGCTGCTTGGCGTGGGCGGTGTGGTCAATGCCGCCTACGCGCACAGCCGGATGGACGCGCTACGGGGCGGCCAGTA CGTGCTGGGCTACGCCTGGAACAACTGGCGTTTCAACGTCAATCTGGGCAGCCAGCGCACCCATGGCGACTATCGCGACC TGGGCGCATTGCAAGGCGCCCTGCCAGCGCGCGTCAGCGACCGCGCAGCAGTCGGGGTCAACGTCGACCCGATCGGCTCG CTCGGCACCAGCTATGTGCGGCTGAGCTATCCGCAAGGCGATACCTCGCGCTATGCGAGCGTGTTCTGGTCCCGCAGCTT CGGGCGCAACTGGGCGGCCAATCTGTCGGGCAATCAGAATCTGGATGTCTCCAGCGATCGCAGCCTGTACCTGTCGCTGT CGACCACCTTCGGCGAAGTGCGTCAGGCCAGCGCATCGATGCAGCGCAACGGCGAGCGTACCGGCCTGGTGGCCGACGTC AGCCAGCCGCTGCCTGGCGATGGCGATCTGGGCGGCATCGGCTGGCGCCTGCAAGGCCGTGCCGGCGACGACGCCAGCGG CGGGCTGGCCGAACTGGGCTGGTTGAACCGGGTCGGCCGCTACAACCTCGGCGCCGCAACCCAGGACGGCGACAGCTTCG GCTATGCCAGCGCCAGCGGTAGCCTGGTGTGGATGAATGGCCGCACCTTCGCCGCGCGCGATATCCAGGACGCGTTCGCG GTGGTCTCCACCGACGGCCAGCCCGGCATTCCGGTCCGCCTGGAAAACCGCCTGATCGGAGTCACCGACGCGCGCGGCAC CCTGCTGGTGACGCCGTTGCAATCGTGGCAGCGCAACCAGCTCTCCATCGACACCTTGAGCCTGCCGGCAGACCTGCGCG TAGACCGTGTCGACACCACGGTGACACCACGCCAGCAATCCGGCGTGGCGGTGCGCTTCGGCATTACCCGCGTGCGCGCC GCCATCATCGTGCTGCACGACGCGCAAGGCGCGCCGCTGCCCGTGGGCAGCGTGGTGCAGCGCGACGGCAGTACCGAACG CGTGGTGGTCGGCTACGACGGCGAAACCTATCTGGACAATCTGCAACGCGACAACCGCATCCTGGTCGACCTGCCCGAGG GCCGTTGCGTTGCGCAGTTCGCGTATCCCGCCGATCCGGGCGGCATTCCGCGGGTGGGGCCGCTGCAGTGCATCCCTGAG CAGACCACGCCATGA
Upstream 100 bases:
>100_bases GGCTTGGTCGGTTATGTACTGCCCGGGCAGACCATGCGTTGGTCGCTGAGTGCGCCGCTGGCGCAGTTCGGCCGCGGCAC CATCATCGCAAGGATCAATG
Downstream 100 bases:
>100_bases GCATGTCCACGCTTTGGCGCCTGATGCTCGCGCTGACGATCGCGATGGTGTGGCTTGGGCCCAGCGAGCGGGCGCACGCA GAGACCACCTGCACCGTCAC
Product: PapC family outer membrane usher protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 804; Mature: 804
Protein sequence:
>804_residues MRLTNVPCWPRRRRLDAARLAMTLLATASCLGSAAAGDLADVTSLPDQPPPSATPQPQTLYLDVTLNQADRGLAPFELVD GRLRGSVETLRKLGFILADRVPGELVDLDRLPDVEVRYDAALQRLALQAPLAQLSLSTTVLKAEEVAPPSATASPGMLLN YDLYATRNAGVSSASLATEVRAFGIGRGMVDTTAVFLAYDRPQDKRWRSEAVRLDSAWQMDFPDSATSLSVGDFYSGFVD WSRSIRLGGVQIGRNYALQPYRVLTPTPSFLGEAAVPSTVELYVDGLRQCSGQVPAGPFQLAAQPGISGTGQAQIVVTDA FGRVRRLDFAFYGTPQLLARGISEWSAGIGHLRRDYGVRSFSYDRRRVASATFRKGLRDDFTIEAHAETGGGVINAGAGG VWLLGVGGVVNAAYAHSRMDALRGGQYVLGYAWNNWRFNVNLGSQRTHGDYRDLGALQGALPARVSDRAAVGVNVDPIGS LGTSYVRLSYPQGDTSRYASVFWSRSFGRNWAANLSGNQNLDVSSDRSLYLSLSTTFGEVRQASASMQRNGERTGLVADV SQPLPGDGDLGGIGWRLQGRAGDDASGGLAELGWLNRVGRYNLGAATQDGDSFGYASASGSLVWMNGRTFAARDIQDAFA VVSTDGQPGIPVRLENRLIGVTDARGTLLVTPLQSWQRNQLSIDTLSLPADLRVDRVDTTVTPRQQSGVAVRFGITRVRA AIIVLHDAQGAPLPVGSVVQRDGSTERVVVGYDGETYLDNLQRDNRILVDLPEGRCVAQFAYPADPGGIPRVGPLQCIPE QTTP
Sequences:
>Translated_804_residues MRLTNVPCWPRRRRLDAARLAMTLLATASCLGSAAAGDLADVTSLPDQPPPSATPQPQTLYLDVTLNQADRGLAPFELVD GRLRGSVETLRKLGFILADRVPGELVDLDRLPDVEVRYDAALQRLALQAPLAQLSLSTTVLKAEEVAPPSATASPGMLLN YDLYATRNAGVSSASLATEVRAFGIGRGMVDTTAVFLAYDRPQDKRWRSEAVRLDSAWQMDFPDSATSLSVGDFYSGFVD WSRSIRLGGVQIGRNYALQPYRVLTPTPSFLGEAAVPSTVELYVDGLRQCSGQVPAGPFQLAAQPGISGTGQAQIVVTDA FGRVRRLDFAFYGTPQLLARGISEWSAGIGHLRRDYGVRSFSYDRRRVASATFRKGLRDDFTIEAHAETGGGVINAGAGG VWLLGVGGVVNAAYAHSRMDALRGGQYVLGYAWNNWRFNVNLGSQRTHGDYRDLGALQGALPARVSDRAAVGVNVDPIGS LGTSYVRLSYPQGDTSRYASVFWSRSFGRNWAANLSGNQNLDVSSDRSLYLSLSTTFGEVRQASASMQRNGERTGLVADV SQPLPGDGDLGGIGWRLQGRAGDDASGGLAELGWLNRVGRYNLGAATQDGDSFGYASASGSLVWMNGRTFAARDIQDAFA VVSTDGQPGIPVRLENRLIGVTDARGTLLVTPLQSWQRNQLSIDTLSLPADLRVDRVDTTVTPRQQSGVAVRFGITRVRA AIIVLHDAQGAPLPVGSVVQRDGSTERVVVGYDGETYLDNLQRDNRILVDLPEGRCVAQFAYPADPGGIPRVGPLQCIPE QTTP >Mature_804_residues MRLTNVPCWPRRRRLDAARLAMTLLATASCLGSAAAGDLADVTSLPDQPPPSATPQPQTLYLDVTLNQADRGLAPFELVD GRLRGSVETLRKLGFILADRVPGELVDLDRLPDVEVRYDAALQRLALQAPLAQLSLSTTVLKAEEVAPPSATASPGMLLN YDLYATRNAGVSSASLATEVRAFGIGRGMVDTTAVFLAYDRPQDKRWRSEAVRLDSAWQMDFPDSATSLSVGDFYSGFVD WSRSIRLGGVQIGRNYALQPYRVLTPTPSFLGEAAVPSTVELYVDGLRQCSGQVPAGPFQLAAQPGISGTGQAQIVVTDA FGRVRRLDFAFYGTPQLLARGISEWSAGIGHLRRDYGVRSFSYDRRRVASATFRKGLRDDFTIEAHAETGGGVINAGAGG VWLLGVGGVVNAAYAHSRMDALRGGQYVLGYAWNNWRFNVNLGSQRTHGDYRDLGALQGALPARVSDRAAVGVNVDPIGS LGTSYVRLSYPQGDTSRYASVFWSRSFGRNWAANLSGNQNLDVSSDRSLYLSLSTTFGEVRQASASMQRNGERTGLVADV SQPLPGDGDLGGIGWRLQGRAGDDASGGLAELGWLNRVGRYNLGAATQDGDSFGYASASGSLVWMNGRTFAARDIQDAFA VVSTDGQPGIPVRLENRLIGVTDARGTLLVTPLQSWQRNQLSIDTLSLPADLRVDRVDTTVTPRQQSGVAVRFGITRVRA AIIVLHDAQGAPLPVGSVVQRDGSTERVVVGYDGETYLDNLQRDNRILVDLPEGRCVAQFAYPADPGGIPRVGPLQCIPE QTTP
Specific function: Involved in the export and assembly of the 987P fimbriae subunits across the outer membrane [H]
COG id: COG3188
COG function: function code NU; P pilus assembly protein, porin PapC
Gene ontology:
Cell location: Cell outer membrane; Multi-pass membrane protein [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the fimbrial export usher family [H]
Homologues:
Organism=Escherichia coli, GI1789533, Length=600, Percent_Identity=22.1666666666667, Blast_Score=78, Evalue=2e-15, Organism=Escherichia coli, GI1789610, Length=388, Percent_Identity=23.9690721649485, Blast_Score=72, Evalue=2e-13, Organism=Escherichia coli, GI1786744, Length=750, Percent_Identity=20.1333333333333, Blast_Score=69, Evalue=1e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000015 - InterPro: IPR018030 [H]
Pfam domain/function: PF00577 Usher [H]
EC number: NA
Molecular weight: Translated: 86380; Mature: 86380
Theoretical pI: Translated: 7.45; Mature: 7.45
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.0 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRLTNVPCWPRRRRLDAARLAMTLLATASCLGSAAAGDLADVTSLPDQPPPSATPQPQTL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCEE YLDVTLNQADRGLAPFELVDGRLRGSVETLRKLGFILADRVPGELVDLDRLPDVEVRYDA EEEEEECCCCCCCCCHHHHCCHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCEEHHHH ALQRLALQAPLAQLSLSTTVLKAEEVAPPSATASPGMLLNYDLYATRNAGVSSASLATEV HHHHHHHHCCHHHHHHHHHEEEHHHCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHH RAFGIGRGMVDTTAVFLAYDRPQDKRWRSEAVRLDSAWQMDFPDSATSLSVGDFYSGFVD HHHCCCCCCCCEEEEEEEECCCCCHHHHHHHEECCCCEECCCCCCCCEEECHHHHHHHHH WSRSIRLGGVQIGRNYALQPYRVLTPTPSFLGEAAVPSTVELYVDGLRQCSGQVPAGPFQ HCCCEEECCEEECCCCCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEE LAAQPGISGTGQAQIVVTDAFGRVRRLDFAFYGTPQLLARGISEWSAGIGHLRRDYGVRS EEECCCCCCCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC FSYDRRRVASATFRKGLRDDFTIEAHAETGGGVINAGAGGVWLLGVGGVVNAAYAHSRMD CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHH ALRGGQYVLGYAWNNWRFNVNLGSQRTHGDYRDLGALQGALPARVSDRAAVGVNVDPIGS HHCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCC LGTSYVRLSYPQGDTSRYASVFWSRSFGRNWAANLSGNQNLDVSSDRSLYLSLSTTFGEV CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEEECCHHHH RQASASMQRNGERTGLVADVSQPLPGDGDLGGIGWRLQGRAGDDASGGLAELGWLNRVGR HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC YNLGAATQDGDSFGYASASGSLVWMNGRTFAARDIQDAFAVVSTDGQPGIPVRLENRLIG CCCCCCCCCCCCCCEECCCCCEEEECCCEEEHHHHHCEEEEEECCCCCCCCEEECCEEEE VTDARGTLLVTPLQSWQRNQLSIDTLSLPADLRVDRVDTTVTPRQQSGVAVRFGITRVRA EECCCCEEEEECHHHCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEECHHEEEE AIIVLHDAQGAPLPVGSVVQRDGSTERVVVGYDGETYLDNLQRDNRILVDLPEGRCVAQF EEEEEECCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCEEEEE AYPADPGGIPRVGPLQCIPEQTTP ECCCCCCCCCCCCCCEECCCCCCC >Mature Secondary Structure MRLTNVPCWPRRRRLDAARLAMTLLATASCLGSAAAGDLADVTSLPDQPPPSATPQPQTL CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCCCCCEE YLDVTLNQADRGLAPFELVDGRLRGSVETLRKLGFILADRVPGELVDLDRLPDVEVRYDA EEEEEECCCCCCCCCHHHHCCHHCCCHHHHHHHHHHHHCCCCCCEECCCCCCCCEEHHHH ALQRLALQAPLAQLSLSTTVLKAEEVAPPSATASPGMLLNYDLYATRNAGVSSASLATEV HHHHHHHHCCHHHHHHHHHEEEHHHCCCCCCCCCCCEEEEEEEEEECCCCCCHHHHHHHH RAFGIGRGMVDTTAVFLAYDRPQDKRWRSEAVRLDSAWQMDFPDSATSLSVGDFYSGFVD HHHCCCCCCCCEEEEEEEECCCCCHHHHHHHEECCCCEECCCCCCCCEEECHHHHHHHHH WSRSIRLGGVQIGRNYALQPYRVLTPTPSFLGEAAVPSTVELYVDGLRQCSGQVPAGPFQ HCCCEEECCEEECCCCCCCCEEEECCCHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCEE LAAQPGISGTGQAQIVVTDAFGRVRRLDFAFYGTPQLLARGISEWSAGIGHLRRDYGVRS EEECCCCCCCCCEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCC FSYDRRRVASATFRKGLRDDFTIEAHAETGGGVINAGAGGVWLLGVGGVVNAAYAHSRMD CCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEECCCCCEEEEECCCHHHHHHHHHHHH ALRGGQYVLGYAWNNWRFNVNLGSQRTHGDYRDLGALQGALPARVSDRAAVGVNVDPIGS HHCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEEECCCCCCCC LGTSYVRLSYPQGDTSRYASVFWSRSFGRNWAANLSGNQNLDVSSDRSLYLSLSTTFGEV CCCCEEEEECCCCCHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCCEEEEEEECCHHHH RQASASMQRNGERTGLVADVSQPLPGDGDLGGIGWRLQGRAGDDASGGLAELGWLNRVGR HHHHHHHHHCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCC YNLGAATQDGDSFGYASASGSLVWMNGRTFAARDIQDAFAVVSTDGQPGIPVRLENRLIG CCCCCCCCCCCCCCEECCCCCEEEECCCEEEHHHHHCEEEEEECCCCCCCCEEECCEEEE VTDARGTLLVTPLQSWQRNQLSIDTLSLPADLRVDRVDTTVTPRQQSGVAVRFGITRVRA EECCCCEEEEECHHHCCCCCEEEEEECCCCCCEEECCCCCCCCCCCCCEEEEECHHEEEE AIIVLHDAQGAPLPVGSVVQRDGSTERVVVGYDGETYLDNLQRDNRILVDLPEGRCVAQF EEEEEECCCCCCCCHHHHHHCCCCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCEEEEE AYPADPGGIPRVGPLQCIPEQTTP ECCCCCCCCCCCCCCEECCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7906265 [H]