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The map label for this gene is yagA [H]

Identifier: 78045016

GI number: 78045016

Start: 1113354

End: 1114700

Strand: Direct

Name: yagA [H]

Synonym: CHY_2642

Alternate gene names: 78045016

Gene position: 1113354-1114700 (Clockwise)

Preceding gene: 78044239

Following gene: 78044232

Centisome position: 46.36

GC content: 44.91

Gene sequence:

>1347_bases
ATGGTCAGGTTGCCAAAGGAATTATCTTATCAGCAAGAAATTGCTCTTAAACGTTTTGCTCTGATAGCACCTTTGCTGGA
GCCGGATTTAGAAGCGGCGGAAAAGCGCCAACGCCGGAAAGAAATCTTAGCCAGGAGTGAAATTTCCTCCCGTACCCTGC
GCCGCTACTTACAACTTTACCGCCAGCAGGGTTTATCCGGTCTTATGCCAAAAATCCGGTCTGATAATGGAAGCAGTCGT
ACTATAAGCCATGAAATAATCGAAGAGGCGGTAAAACTTAAGGAAGAACTTCCGGAACGGAGTGTAAGCCAAATCATAGC
GATTTTAGAAGGAGAAAAGAAAGTTCCTGCAGGAATGTTAGCCCGGTCTACCCTTGGAAGGCATCTTTCTCGTTTAGGCC
TAACCCAAAAGGAAGCTAACCAAAAGATATCAGGGCACAGGCGTTTTGCAAAAGAACAGCGTAATCGCCTCTGGCAAGCA
GATATCAAATATGGGCCGTATCTACCGCATCCAAAGAATCCCAAACGCAAAGTGCGAACTTATTTAGTGGCATTTATCGA
TGATGCTACTCGTCTTCTTTGTCATGGAGAGTTTTATCTTGACCAGAAGAGGCCAGTTTTAGAAGATTGTTTTCGTAAAG
CCATCTTGAAACGAGGAATCCCGGATGCGGTATATGTAGATAATGGCAAGATTTTTGTTTCCCGCTGGTTTCGTTTGGGA
TGTGCCAGGCTGGGGATAAGGCCAATTAATACTAAGCCATATTCACCTGAATCTAAGGGGAAAATTGAAAGGTTTAACCG
CACCGTTGAGTCTTTTATAGCCGAAATAGAACTGCAACAACCTGAGACCCTGGCAGAACTTAACCAGGCTTTTGCTGTTT
GGGTTGAAGAAGGTTATAACCACCACCCGCACAGCTCTTTAGAAAACGAAACTCCGGCTAACCGTTTCCAGAAGGATACC
CGGCGTTTACGGTTTGCCAGCCTGGAAGAATGTCGGGAAGCTTTCCTCTGGGAAGCAAGTCGTCGGGTAGATAAAACAGG
ATGTATCAAACTTGAAGGACGGTTTTATGAAATTGGTTTGGAATGGATACGAAAAACCGTTGATCTCCGTTACGACCCTT
TTGACTTAGAAAGTATCGAGTTCTGGTATAACGGCCAAAAGCAGGGACTGGCCAAGCCTTTGGTTATCCAGGAATACAAC
AACCTTGCTGCAAAAAATAAAAAAGAGCAAGAAAATAAAACACCAAAAACTTCCCGCCTCTTAACAGTACTTGAAGAAAG
AAGTATTGAACGCCGCCGGCGAAAATTAGGGGCCATACCCTTCCGCCAGCTGGAAGGGGGTAAGTAA

Upstream 100 bases:

>100_bases
GTGGTCGGCCTCTGGCTTTAACTAATTTCACATAGTTTGGTCTCCTGGCCATTCTTGGGATTGTGGTATGGTGAATTTAA
CACCATATTTAAACAAGGAG

Downstream 100 bases:

>100_bases
AAATGTTTGAACACTTTTTTGGTTTTCACCGCACCCCCTTCGGGAGGGATCTGCCGGTAAACTCTTTGTTTACCACTCCT
GCCCATGAAGAGCTGGTATC

Product: ISChy3, transposase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 448; Mature: 448

Protein sequence:

>448_residues
MVRLPKELSYQQEIALKRFALIAPLLEPDLEAAEKRQRRKEILARSEISSRTLRRYLQLYRQQGLSGLMPKIRSDNGSSR
TISHEIIEEAVKLKEELPERSVSQIIAILEGEKKVPAGMLARSTLGRHLSRLGLTQKEANQKISGHRRFAKEQRNRLWQA
DIKYGPYLPHPKNPKRKVRTYLVAFIDDATRLLCHGEFYLDQKRPVLEDCFRKAILKRGIPDAVYVDNGKIFVSRWFRLG
CARLGIRPINTKPYSPESKGKIERFNRTVESFIAEIELQQPETLAELNQAFAVWVEEGYNHHPHSSLENETPANRFQKDT
RRLRFASLEECREAFLWEASRRVDKTGCIKLEGRFYEIGLEWIRKTVDLRYDPFDLESIEFWYNGQKQGLAKPLVIQEYN
NLAAKNKKEQENKTPKTSRLLTVLEERSIERRRRKLGAIPFRQLEGGK

Sequences:

>Translated_448_residues
MVRLPKELSYQQEIALKRFALIAPLLEPDLEAAEKRQRRKEILARSEISSRTLRRYLQLYRQQGLSGLMPKIRSDNGSSR
TISHEIIEEAVKLKEELPERSVSQIIAILEGEKKVPAGMLARSTLGRHLSRLGLTQKEANQKISGHRRFAKEQRNRLWQA
DIKYGPYLPHPKNPKRKVRTYLVAFIDDATRLLCHGEFYLDQKRPVLEDCFRKAILKRGIPDAVYVDNGKIFVSRWFRLG
CARLGIRPINTKPYSPESKGKIERFNRTVESFIAEIELQQPETLAELNQAFAVWVEEGYNHHPHSSLENETPANRFQKDT
RRLRFASLEECREAFLWEASRRVDKTGCIKLEGRFYEIGLEWIRKTVDLRYDPFDLESIEFWYNGQKQGLAKPLVIQEYN
NLAAKNKKEQENKTPKTSRLLTVLEERSIERRRRKLGAIPFRQLEGGK
>Mature_448_residues
MVRLPKELSYQQEIALKRFALIAPLLEPDLEAAEKRQRRKEILARSEISSRTLRRYLQLYRQQGLSGLMPKIRSDNGSSR
TISHEIIEEAVKLKEELPERSVSQIIAILEGEKKVPAGMLARSTLGRHLSRLGLTQKEANQKISGHRRFAKEQRNRLWQA
DIKYGPYLPHPKNPKRKVRTYLVAFIDDATRLLCHGEFYLDQKRPVLEDCFRKAILKRGIPDAVYVDNGKIFVSRWFRLG
CARLGIRPINTKPYSPESKGKIERFNRTVESFIAEIELQQPETLAELNQAFAVWVEEGYNHHPHSSLENETPANRFQKDT
RRLRFASLEECREAFLWEASRRVDKTGCIKLEGRFYEIGLEWIRKTVDLRYDPFDLESIEFWYNGQKQGLAKPLVIQEYN
NLAAKNKKEQENKTPKTSRLLTVLEERSIERRRRKLGAIPFRQLEGGK

Specific function: Unknown

COG id: COG2801

COG function: function code L; Transposase and inactivated derivatives

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 integrase catalytic domain [H]

Homologues:

Organism=Escherichia coli, GI1786462, Length=371, Percent_Identity=26.9541778975741, Blast_Score=94, Evalue=1e-20,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR001584
- InterPro:   IPR012337 [H]

Pfam domain/function: PF00665 rve [H]

EC number: NA

Molecular weight: Translated: 52321; Mature: 52321

Theoretical pI: Translated: 10.36; Mature: 10.36

Prosite motif: PS50994 INTEGRASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVRLPKELSYQQEIALKRFALIAPLLEPDLEAAEKRQRRKEILARSEISSRTLRRYLQLY
CCCCCHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQQGLSGLMPKIRSDNGSSRTISHEIIEEAVKLKEELPERSVSQIIAILEGEKKVPAGML
HHCCHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHH
ARSTLGRHLSRLGLTQKEANQKISGHRRFAKEQRNRLWQADIKYGPYLPHPKNPKRKVRT
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHH
YLVAFIDDATRLLCHGEFYLDQKRPVLEDCFRKAILKRGIPDAVYVDNGKIFVSRWFRLG
HHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
CARLGIRPINTKPYSPESKGKIERFNRTVESFIAEIELQQPETLAELNQAFAVWVEEGYN
HHHHCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
HHPHSSLENETPANRFQKDTRRLRFASLEECREAFLWEASRRVDKTGCIKLEGRFYEIGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
EWIRKTVDLRYDPFDLESIEFWYNGQKQGLAKPLVIQEYNNLAAKNKKEQENKTPKTSRL
HHHHHHHCCCCCCCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCHHHHH
LTVLEERSIERRRRKLGAIPFRQLEGGK
HHHHHHHHHHHHHHHHCCCCHHHCCCCC
>Mature Secondary Structure
MVRLPKELSYQQEIALKRFALIAPLLEPDLEAAEKRQRRKEILARSEISSRTLRRYLQLY
CCCCCHHHCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
RQQGLSGLMPKIRSDNGSSRTISHEIIEEAVKLKEELPERSVSQIIAILEGEKKVPAGML
HHCCHHHHCCHHCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCHHHH
ARSTLGRHLSRLGLTQKEANQKISGHRRFAKEQRNRLWQADIKYGPYLPHPKNPKRKVRT
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEECCCCCCCCCCCCCCHHHHHHH
YLVAFIDDATRLLCHGEFYLDQKRPVLEDCFRKAILKRGIPDAVYVDNGKIFVSRWFRLG
HHHHHHHHHHHHHHCCHHEECCCCCHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHH
CARLGIRPINTKPYSPESKGKIERFNRTVESFIAEIELQQPETLAELNQAFAVWVEEGYN
HHHHCCEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC
HHPHSSLENETPANRFQKDTRRLRFASLEECREAFLWEASRRVDKTGCIKLEGRFYEIGL
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHH
EWIRKTVDLRYDPFDLESIEFWYNGQKQGLAKPLVIQEYNNLAAKNKKEQENKTPKTSRL
HHHHHHHCCCCCCCCCCHHHEEECCCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCHHHHH
LTVLEERSIERRRRKLGAIPFRQLEGGK
HHHHHHHHHHHHHHHHCCCCHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503; 8113168 [H]