Click here to switch to the map view.

The map label for this gene is fliR [H]

Identifier: 78044979

GI number: 78044979

Start: 888082

End: 888849

Strand: Direct

Name: fliR [H]

Synonym: CHY_1007

Alternate gene names: 78044979

Gene position: 888082-888849 (Clockwise)

Preceding gene: 78043118

Following gene: 78044903

Centisome position: 36.98

GC content: 44.14

Gene sequence:

>768_bases
ATGACCCAGTGGCTTATTTTTCTTATAATTGCGGCAAGGCTGGCCGGCTTTTTTGGCATCTCGCCTTTAATCATTCCGGT
ACGGGGTGTACCGCCGGCGGTCAAAGGGTTTTTTACCCTGATTGTAGCCTATTTGTTACTGCCGACGGTGGCAGGAAGCT
TTACGGCAACGGACGTTCAGCGGAATTTTTTTCTCCTCTTAATCGGTGAAAGTTTAATTGGTCTTTTGTTGGGGTTCGTA
ACTTTAATCTTTGCCAATTTATATCTCGTTGCCGGACAGTATATGGACCTGACTTCGGGACTCAGCGCCGCTACCCTATT
TGATCCCCTGACCCAGACCAATGCCGGATTAATGGCCAATTTTATTTATCTCTACGGCATCTTAAACTACTTTTTGGCCA
ACGGACACCACCGCCTCTTAACTTTTTTGACGGTGAGTTTTGAGCTAATTCCACCCGGCAAAGGTTTACTGCACCCGGGG
TTAAGCGAATTACTAATAAAGATTTTCGCGTTGGTTATGTTAGTAGCGATTGAAATTGCCATACCGTTTCTCATGGTGAT
GCTTATCAGCGATTTAGCTCTTGGCATTTTAGCGCGAACTGCCCCGCAAATGAATGTGTTTCTGCTGAGTTTTGGTTTAA
AGATTTTACTGGCCATCTTCACTTTATGGCTTTTACTTCCCGGGATTGCGTATTTTACCGGAATTTACCTGGAATTAATG
GAAAAAAATCTTTTAGCCATCATAAGGGGAATAGGCTATGGCAGATGA

Upstream 100 bases:

>100_bases
TTTTACTCTTAAGCGGCTGGATGCTAAATATTATGGTAGACTTTACCGGACAAATCTTTCAGGAAATGGCTAAAGTTCGC
TTTTAGGAGTTCAAGATACG

Downstream 100 bases:

>100_bases
GCAGAGAGACCAGCGTACCGAGGCCCCCACTCCCCGAAGGTTAGCTGAAGCCCGGCGTCGCGGGCAGGTTTTTAAGAGTC
AGGAATTAAACTTTGCGGTA

Product: flagellar biosynthetic protein FliR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 255; Mature: 254

Protein sequence:

>255_residues
MTQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQRNFFLLLIGESLIGLLLGFV
TLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMANFIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPG
LSELLIKIFALVMLVAIEIAIPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELM
EKNLLAIIRGIGYGR

Sequences:

>Translated_255_residues
MTQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQRNFFLLLIGESLIGLLLGFV
TLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMANFIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPG
LSELLIKIFALVMLVAIEIAIPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELM
EKNLLAIIRGIGYGR
>Mature_254_residues
TQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQRNFFLLLIGESLIGLLLGFVT
LIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMANFIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGL
SELLIKIFALVMLVAIEIAIPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELME
KNLLAIIRGIGYGR

Specific function: Role in flagellar biosynthesis [H]

COG id: COG1684

COG function: function code NU; Flagellar biosynthesis pathway, component FliR

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential). Bacterial flagellum basal body [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the fliR/mopE/spaR family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006303
- InterPro:   IPR002010 [H]

Pfam domain/function: PF01311 Bac_export_1 [H]

EC number: NA

Molecular weight: Translated: 27914; Mature: 27783

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
2.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQ
CHHHHHHHHHHHHHHHHHCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RNFFLLLIGESLIGLLLGFVTLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMAN
HHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHH
FIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIA
HHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELM
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKNLLAIIRGIGYGR
HHHHHHHHHHCCCCC
>Mature Secondary Structure 
TQWLIFLIIAARLAGFFGISPLIIPVRGVPPAVKGFFTLIVAYLLLPTVAGSFTATDVQ
HHHHHHHHHHHHHHHHHCCCHHEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
RNFFLLLIGESLIGLLLGFVTLIFANLYLVAGQYMDLTSGLSAATLFDPLTQTNAGLMAN
HHHHEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHH
FIYLYGILNYFLANGHHRLLTFLTVSFELIPPGKGLLHPGLSELLIKIFALVMLVAIEIA
HHHHHHHHHHHHHCCHHHHHHHHHHHHEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
IPFLMVMLISDLALGILARTAPQMNVFLLSFGLKILLAIFTLWLLLPGIAYFTGIYLELM
HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
EKNLLAIIRGIGYGR
HHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8299954; 9384377 [H]