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The map label for this gene is ygcF [C]

Identifier: 78043751

GI number: 78043751

Start: 841977

End: 842693

Strand: Direct

Name: ygcF [C]

Synonym: CHY_0954

Alternate gene names: 78043751

Gene position: 841977-842693 (Clockwise)

Preceding gene: 78043062

Following gene: 78045076

Centisome position: 35.06

GC content: 37.38

Gene sequence:

>717_bases
ATGGCAAATATTGTAGAAATCTTTCCATCACTCCAGGGAGAAGGTTTGTATGCCGGTGTTTCCACCCTTTTTATTCGCTT
TTCCGGATGTAATTTAAACTGCAGTTATTGTGACACCGAAGATGCCAGGGAAAAAAGGGAAAGATTTACGGTAACGAAAG
AAGACGGTTCCCTTTTAGAATTTTTAAATCCGGTAACTCCGGAAAAATTGGTGGAAATTTTGCGAGAAAATTACGATTTT
ACCTACTTTCCACAGCTTGCCCTAACGGGGGGAGAACCTCTCCTTCACGCTTCCTTTTTAAAAGAATTTTTGCCAAAATT
GTCTTATCCCGGAGAGGTCCTTTTAGAAACTAATGGGACTTTGCCGGATAAATTAAACGAGGTTTTAAATTCTGTAGACA
TAATAAGCCAGGATTTTAAGTTAAAGCCTTTTATTGCGGAAGATTGTTTTACCCTTCACCGGGAGTTTTTACAGGAAGCT
TCCCGCAAAAAAGTTTATGTAAAAATGGTTATCTCTCCTGAAGTTCAAGATTCGGAGTTTAACGGGGCTATAAACGAGAT
TGCTTTGGTAAATTCTAAAATACCCTTAATATTGCAACCGGTAATGCCAATAAATTATTCTCTTGATTTTCTTTTCCAAA
AGCAAAAAATGGCTTTAAAAAAGCTTTGGGATGTTCGGATAATTCCGCAGGTTCATAAACTTCTGCAGCTAAAATAA

Upstream 100 bases:

>100_bases
AATTGTTCAGCGCTATGGCATGGAAATGGAAGCGATAAATTTGGCAAAGGCTAAGGTAAGAGGAGTTTTTTAATCCTGAA
ATCGAGGTGTTTTTTCTTTT

Downstream 100 bases:

>100_bases
GGTATTGGAGGCGTTTTCATGGTTGATAAAGAAAAAATTGAAATTGCCGTGCGGATGATTTTGGAAGCTATTGGAGAAGA
TCCGGACCGGGAAGGGCTTA

Product: radical SAM domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 238; Mature: 237

Protein sequence:

>238_residues
MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNLNCSYCDTEDAREKRERFTVTKEDGSLLEFLNPVTPEKLVEILRENYDF
TYFPQLALTGGEPLLHASFLKEFLPKLSYPGEVLLETNGTLPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEA
SRKKVYVKMVISPEVQDSEFNGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLWDVRIIPQVHKLLQLK

Sequences:

>Translated_238_residues
MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNLNCSYCDTEDAREKRERFTVTKEDGSLLEFLNPVTPEKLVEILRENYDF
TYFPQLALTGGEPLLHASFLKEFLPKLSYPGEVLLETNGTLPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEA
SRKKVYVKMVISPEVQDSEFNGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLWDVRIIPQVHKLLQLK
>Mature_237_residues
ANIVEIFPSLQGEGLYAGVSTLFIRFSGCNLNCSYCDTEDAREKRERFTVTKEDGSLLEFLNPVTPEKLVEILRENYDFT
YFPQLALTGGEPLLHASFLKEFLPKLSYPGEVLLETNGTLPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEAS
RKKVYVKMVISPEVQDSEFNGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLWDVRIIPQVHKLLQLK

Specific function: Unknown

COG id: COG0602

COG function: function code O; Organic radical activating enzymes

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789139, Length=123, Percent_Identity=32.520325203252, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007197 [H]

Pfam domain/function: PF04055 Radical_SAM [H]

EC number: NA

Molecular weight: Translated: 27237; Mature: 27106

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANIVEIFPSLQGEGLYAGVSTLFIRFSGCNLNCSYCDTEDAREKRERFTVTKEDGSLLE
CCCHHHHHCCCCCCCCCCCCEEEEEEEECCCEECCCCCCHHHHHHHHHCEEECCCCCHHH
FLNPVTPEKLVEILRENYDFTYFPQLALTGGEPLLHASFLKEFLPKLSYPGEVLLETNGT
HHCCCCHHHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
LPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEASRKKVYVKMVISPEVQDSEF
CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCC
NGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLWDVRIIPQVHKLLQLK
CCCHHHEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEECHHHHHHHCCC
>Mature Secondary Structure 
ANIVEIFPSLQGEGLYAGVSTLFIRFSGCNLNCSYCDTEDAREKRERFTVTKEDGSLLE
CCHHHHHCCCCCCCCCCCCEEEEEEEECCCEECCCCCCHHHHHHHHHCEEECCCCCHHH
FLNPVTPEKLVEILRENYDFTYFPQLALTGGEPLLHASFLKEFLPKLSYPGEVLLETNGT
HHCCCCHHHHHHHHHCCCCEEEECCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEECCCC
LPDKLNEVLNSVDIISQDFKLKPFIAEDCFTLHREFLQEASRKKVYVKMVISPEVQDSEF
CHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCC
NGAINEIALVNSKIPLILQPVMPINYSLDFLFQKQKMALKKLWDVRIIPQVHKLLQLK
CCCHHHEEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEECHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8688087 [H]