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The map label for this gene is rfbC [H]

Identifier: 78043500

GI number: 78043500

Start: 864609

End: 865085

Strand: Direct

Name: rfbC [H]

Synonym: CHY_0977

Alternate gene names: 78043500

Gene position: 864609-865085 (Clockwise)

Preceding gene: 78044259

Following gene: 78044837

Centisome position: 36.0

GC content: 42.35

Gene sequence:

>477_bases
GTGGAATTCCAAAAAGGAGAAATTGAAGGGGTAATAATAAGACCTTTAAAAAAACACATAGACGAACGCGGTTGGCTCTG
TGAACTCTTTCGGCAGGATGAAATAGAAGAAACAATAATGCCGGTTATGAGCTATATTTCACAGACATTACCGGGCATAG
TTCGAGGTCCCCACGAACACAAAGAACAAACCGACTACTTTGCTTTTATAGGCCCCGGCAACTTTAAAATCTATCTTTGG
GACAACCGAAGAGACAGTTCAACATATGGCAACCGGCAGATAATTTATGCTGGCGAAGATAACCCGGCAGTAATCATCGT
ACCGCCGGGAGTAGTTCATGCGTATAAAAACGTAAGTACCAAACCCGGCTTAGTTTTTAATTCTCCCAATAAGCTTTATG
CCGGCTGGGGAAGAAAAGAGCAAGTCGATGAGGTGCGCTGGGAAAATAAAGAGAACTCTCCATTCATAATTGATTAA

Upstream 100 bases:

>100_bases
ATGAAAGCTTAATCGGAAGAAAAACAAGGGTAATAAAAGACGGTTCAGTAAACAAAGCCGTAAAGCTAATGATTGGTGAC
GATGCGGAGGTACGGTTATA

Downstream 100 bases:

>100_bases
AAATAAACAGAATAAATCAAATTAAAGGAAAGAAGAGCATGAAAAAAATAGTGATAGCCGGAGCCGGAGGACAATTAGGA
AAAGCCTTTACCAAGAAGCT

Product: dTDP-4-dehydrorhamnose 3,5-epimerase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MEFQKGEIEGVIIRPLKKHIDERGWLCELFRQDEIEETIMPVMSYISQTLPGIVRGPHEHKEQTDYFAFIGPGNFKIYLW
DNRRDSSTYGNRQIIYAGEDNPAVIIVPPGVVHAYKNVSTKPGLVFNSPNKLYAGWGRKEQVDEVRWENKENSPFIID

Sequences:

>Translated_158_residues
MEFQKGEIEGVIIRPLKKHIDERGWLCELFRQDEIEETIMPVMSYISQTLPGIVRGPHEHKEQTDYFAFIGPGNFKIYLW
DNRRDSSTYGNRQIIYAGEDNPAVIIVPPGVVHAYKNVSTKPGLVFNSPNKLYAGWGRKEQVDEVRWENKENSPFIID
>Mature_158_residues
MEFQKGEIEGVIIRPLKKHIDERGWLCELFRQDEIEETIMPVMSYISQTLPGIVRGPHEHKEQTDYFAFIGPGNFKIYLW
DNRRDSSTYGNRQIIYAGEDNPAVIIVPPGVVHAYKNVSTKPGLVFNSPNKLYAGWGRKEQVDEVRWENKENSPFIID

Specific function: Unknown

COG id: COG1898

COG function: function code M; dTDP-4-dehydrorhamnose 3,5-epimerase and related enzymes

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To dTDP-4-dehydrorhamnose reductase [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011051
- InterPro:   IPR000888
- InterPro:   IPR014710
- ProDom:   PD001462 [H]

Pfam domain/function: PF00908 dTDP_sugar_isom [H]

EC number: NA

Molecular weight: Translated: 18295; Mature: 18295

Theoretical pI: Translated: 5.68; Mature: 5.68

Prosite motif: PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFQKGEIEGVIIRPLKKHIDERGWLCELFRQDEIEETIMPVMSYISQTLPGIVRGPHEH
CCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCCCC
KEQTDYFAFIGPGNFKIYLWDNRRDSSTYGNRQIIYAGEDNPAVIIVPPGVVHAYKNVST
CCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHCCCC
KPGLVFNSPNKLYAGWGRKEQVDEVRWENKENSPFIID
CCCEEECCCCCEEECCCCCCCHHHHHCCCCCCCCEEEC
>Mature Secondary Structure
MEFQKGEIEGVIIRPLKKHIDERGWLCELFRQDEIEETIMPVMSYISQTLPGIVRGPHEH
CCCCCCCCCEEEEEHHHHHCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCHHHCCCCCC
KEQTDYFAFIGPGNFKIYLWDNRRDSSTYGNRQIIYAGEDNPAVIIVPPGVVHAYKNVST
CCCCCEEEEECCCCEEEEEECCCCCCCCCCCEEEEEECCCCCEEEEECCCHHHHHHCCCC
KPGLVFNSPNKLYAGWGRKEQVDEVRWENKENSPFIID
CCCEEECCCCCEEECCCCCCCHHHHHCCCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]