Definition | Carboxydothermus hydrogenoformans Z-2901 chromosome, complete genome. |
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Accession | NC_007503 |
Length | 2,401,520 |
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The map label for this gene is ytoI [H]
Identifier: 78042899
GI number: 78042899
Start: 1009321
End: 1010628
Strand: Direct
Name: ytoI [H]
Synonym: CHY_1136
Alternate gene names: 78042899
Gene position: 1009321-1010628 (Clockwise)
Preceding gene: 78045079
Following gene: 78044608
Centisome position: 42.03
GC content: 37.69
Gene sequence:
>1308_bases ATGAGTAATACCAAACATGCAAAATTATTGGCTTATATTCGCAATTTACCTTCCGGTAGCAAAGTGTCGGTAAGATTGTT AGCCAAAGAATTAAAGGTTAGTGAAGGTACCGCTTACAGGGCAATTAAAGAAGCGGAAGCGGAAGGTTTGGTAAAAACTG TTCCTAAAGTAGGAACGATTCGCATAACAAATATCGAAAAAAAAGAATTAAAAGATTTAACATTAAATGAAATTATAAAA ATAACCGAGTCCCATTTGCTGGTGGGGGAAGATTTGTTAAATTACCGTTTTGCAAATTTTTTAATTGGGGCAATGGCTGT TGAAGCTATCGAAAGATTTTTGGTAGAGGGTTGCTTATTTATCGTAGGCAACCGGGAAGATGCCCAGTTAAAAGCTTTAC AAAGCGGTGCCCACCTGCTGATAACCGGAGGTTTTCCGGTAAAGACGGAACTTTTAGAACTGGCAAGGGAAAATAATTTA GCGATATTATCATCACCGTACGATACTTTTACGGTAACGTCGCTTTTGCATCAAGCTTTATATGAGCGCTTAAAAGAAAA AGAAGTTATAACCGCAAGAGATATTATGGTAAAAAAAGTATTTACCCTTTCTTTAGGGCAAAGGGTGAGGGATTGGCGCC AATTATTTCTCAATACCGGCCACAGCCGTTTTCCGGTGGTGGATAAGGAAAATCGGGTTTGCGGCATAATCACTGCTACC GATGTTGCCGGTGCCGGGGAAGACGAGTTAGTGGAAAATTTAATGTCAAAAGATGTTATTTCCGCCAGTCCCGAAACGCC TATTGGTCATATAGCCAGGGTTATGACCTGGGACAGGATTGATTTGGTTCCGGTTGTGGATGAGTCTTTTAAGTTATTAG GCATTATTAGCCGCCAAAATATTATTGATGCTTTACAGCGGCTGGAAAGACAACCGCATTTTGGCGAAACTTTAGAAGAT CTTATTATAAAAAATTTCCATGTTGGTGAGGACGAAAACGGGATATTTTTAGAAGGAAAAATAAATGATTTTTTAATAAA TGAACTGAGTATGTTAAGTTCCACTGTTCTTTTATCCCTTTCCATTTTTTATGCCAATCTGATGGTGCGAAAAAAAGTTA AAGCTCCGGTAGTGGTTAATAATTTTTCTTTATCTCTGTTAACTCCCCTAACTTATGGAGAAACCCTTGTAGTTCGGGGT AAGTTGTTGTACCTGGAAAAAAGAAATGCAAAATTAGAGATAGATTTTTATAGGCAAAGTAACCTGAATGCCAAAGCTTT AATTGAGGTTCGTTTAATTGAAAAATAA
Upstream 100 bases:
>100_bases AAAAGAAGTGGAAAAAAAGATGGGGTTTTCTGTAAAAAATCATCGTTTAGAATTTTACGGAGTATGCAGTGATTGCCAGC AAAAAGTTAGGGTGGATTAA
Downstream 100 bases:
>100_bases GGCACCCGTCGGAGGTGTCTTTTGGTTTATTATAGGAGGATATGTGTATGAGTTTTGTACATTTGCATACCCATAGCTGT TACAGTTTATTGGATGGAGC
Product: CBS domain-containing protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 435; Mature: 434
Protein sequence:
>435_residues MSNTKHAKLLAYIRNLPSGSKVSVRLLAKELKVSEGTAYRAIKEAEAEGLVKTVPKVGTIRITNIEKKELKDLTLNEIIK ITESHLLVGEDLLNYRFANFLIGAMAVEAIERFLVEGCLFIVGNREDAQLKALQSGAHLLITGGFPVKTELLELARENNL AILSSPYDTFTVTSLLHQALYERLKEKEVITARDIMVKKVFTLSLGQRVRDWRQLFLNTGHSRFPVVDKENRVCGIITAT DVAGAGEDELVENLMSKDVISASPETPIGHIARVMTWDRIDLVPVVDESFKLLGIISRQNIIDALQRLERQPHFGETLED LIIKNFHVGEDENGIFLEGKINDFLINELSMLSSTVLLSLSIFYANLMVRKKVKAPVVVNNFSLSLLTPLTYGETLVVRG KLLYLEKRNAKLEIDFYRQSNLNAKALIEVRLIEK
Sequences:
>Translated_435_residues MSNTKHAKLLAYIRNLPSGSKVSVRLLAKELKVSEGTAYRAIKEAEAEGLVKTVPKVGTIRITNIEKKELKDLTLNEIIK ITESHLLVGEDLLNYRFANFLIGAMAVEAIERFLVEGCLFIVGNREDAQLKALQSGAHLLITGGFPVKTELLELARENNL AILSSPYDTFTVTSLLHQALYERLKEKEVITARDIMVKKVFTLSLGQRVRDWRQLFLNTGHSRFPVVDKENRVCGIITAT DVAGAGEDELVENLMSKDVISASPETPIGHIARVMTWDRIDLVPVVDESFKLLGIISRQNIIDALQRLERQPHFGETLED LIIKNFHVGEDENGIFLEGKINDFLINELSMLSSTVLLSLSIFYANLMVRKKVKAPVVVNNFSLSLLTPLTYGETLVVRG KLLYLEKRNAKLEIDFYRQSNLNAKALIEVRLIEK >Mature_434_residues SNTKHAKLLAYIRNLPSGSKVSVRLLAKELKVSEGTAYRAIKEAEAEGLVKTVPKVGTIRITNIEKKELKDLTLNEIIKI TESHLLVGEDLLNYRFANFLIGAMAVEAIERFLVEGCLFIVGNREDAQLKALQSGAHLLITGGFPVKTELLELARENNLA ILSSPYDTFTVTSLLHQALYERLKEKEVITARDIMVKKVFTLSLGQRVRDWRQLFLNTGHSRFPVVDKENRVCGIITATD VAGAGEDELVENLMSKDVISASPETPIGHIARVMTWDRIDLVPVVDESFKLLGIISRQNIIDALQRLERQPHFGETLEDL IIKNFHVGEDENGIFLEGKINDFLINELSMLSSTVLLSLSIFYANLMVRKKVKAPVVVNNFSLSLLTPLTYGETLVVRGK LLYLEKRNAKLEIDFYRQSNLNAKALIEVRLIEK
Specific function: Unknown
COG id: COG4109
COG function: function code K; Predicted transcriptional regulator containing CBS domains
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Contains 2 CBS domains [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000644 - InterPro: IPR010766 - InterPro: IPR000524 - InterPro: IPR006683 - InterPro: IPR011991 [H]
Pfam domain/function: PF03061 4HBT; PF00571 CBS; PF07085 DRTGG; PF00392 GntR [H]
EC number: NA
Molecular weight: Translated: 48865; Mature: 48733
Theoretical pI: Translated: 7.72; Mature: 7.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.1 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTKHAKLLAYIRNLPSGSKVSVRLLAKELKVSEGTAYRAIKEAEAEGLVKTVPKVGTI CCCCHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCEE RITNIEKKELKDLTLNEIIKITESHLLVGEDLLNYRFANFLIGAMAVEAIERFLVEGCLF EEECCCHHHHHCCCHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE IVGNREDAQLKALQSGAHLLITGGFPVKTELLELARENNLAILSSPYDTFTVTSLLHQAL EEECCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH YERLKEKEVITARDIMVKKVFTLSLGQRVRDWRQLFLNTGHSRFPVVDKENRVCGIITAT HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEC DVAGAGEDELVENLMSKDVISASPETPIGHIARVMTWDRIDLVPVVDESFKLLGIISRQN CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEECCEEEEEECCCCCCEEEEHHHHH IIDALQRLERQPHFGETLEDLIIKNFHVGEDENGIFLEGKINDFLINELSMLSSTVLLSL HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH SIFYANLMVRKKVKAPVVVNNFSLSLLTPLTYGETLVVRGKLLYLEKRNAKLEIDFYRQS HHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCEEEEEEEEEEEEECCCEEEEEEEECC NLNAKALIEVRLIEK CCCEEEEEEEEEECC >Mature Secondary Structure SNTKHAKLLAYIRNLPSGSKVSVRLLAKELKVSEGTAYRAIKEAEAEGLVKTVPKVGTI CCCHHHHHHHHHHCCCCCCCEEHHHHHHHHCCCCCHHHHHHHHHHHCCHHHHCCCCCEE RITNIEKKELKDLTLNEIIKITESHLLVGEDLLNYRFANFLIGAMAVEAIERFLVEGCLF EEECCCHHHHHCCCHHHHHHHHHHHEEECHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEE IVGNREDAQLKALQSGAHLLITGGFPVKTELLELARENNLAILSSPYDTFTVTSLLHQAL EEECCCCHHHHHHHCCCEEEEECCCCHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHH YERLKEKEVITARDIMVKKVFTLSLGQRVRDWRQLFLNTGHSRFPVVDKENRVCGIITAT HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECCCCCEEEEEEEC DVAGAGEDELVENLMSKDVISASPETPIGHIARVMTWDRIDLVPVVDESFKLLGIISRQN CCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEECCEEEEEECCCCCCEEEEHHHHH IIDALQRLERQPHFGETLEDLIIKNFHVGEDENGIFLEGKINDFLINELSMLSSTVLLSL HHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHHHH SIFYANLMVRKKVKAPVVVNNFSLSLLTPLTYGETLVVRGKLLYLEKRNAKLEIDFYRQS HHHHHHHHHHHHCCCCEEEECCCEEEECCCCCCCEEEEEEEEEEEEECCCEEEEEEEECC NLNAKALIEVRLIEK CCCEEEEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9387221; 9384377 [H]