| Definition | Xanthomonas axonopodis pv. citri str. 306 chromosome, complete genome. |
|---|---|
| Accession | NC_003919 |
| Length | 5,175,554 |
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The map label for this gene is xylA [H]
Identifier: 77748765
GI number: 77748765
Start: 4984490
End: 4985827
Strand: Direct
Name: xylA [H]
Synonym: XAC4225
Alternate gene names: 77748765
Gene position: 4984490-4985827 (Clockwise)
Preceding gene: 21244938
Following gene: 21244944
Centisome position: 96.31
GC content: 63.83
Gene sequence:
>1338_bases ATGAGCAACACCGTGTACATCGGCGCGAAAGAATATTTCCCCGGCATCGGCAAGATCGGTTTCGAAGGCCGCGATTCGGA CAACCCGCTCGCGTTCAAGGTCTACGACGCCAACAAGACCATCGGCGACAAGACCATGGCCGAGCATCTGCGCTTTGCCG TGGCCTACTGGCACAGCTTCTGCGGCAATGGCGCCGATCCGTTCGGCCCGGGCACGCGTGCGTATCCGTGGGATGTGGGC GATACCGCGTTGAACCGTGCCGAAGCCAAGGCCGATGCGGCGTTCGAGTTCTTCACCAAGCTCGGCGTGCCGTACTACTG CTTTCACGACATCGACCTGTCGCCGGATGCCGATGACATCACTGAGTACGAGAGCAACCTCAAGCACATGGTGGGCGTTG CCAAGCAGCGCCAGGCCGACACCGGCATCAAGCTGCTGTGGGGCACGGCCAACCTGTTCTCGCATCCGCGCTACATGAAT GGTGCCTCGACCAACCCGGACTTCAATGTCGTGGCGCGTGCGGCGGTGCAGGTCAAGGCCGCGATCGATGCCACGGTGGC GCTGGGCGGCGAGAACTACGTGTTCTGGGGCGGGCGCGAAGGCTATGCCTGCCTGCACAACACGCAGATGAAGCGCGAGC AGGACAACATGGCGCGCTTCCTCACCCTGGCGCGCGACTACGGCCGCAGCATCGGCTTCAAAGGCAACTTCCTGATCGAG CCGAAACCCATGGAGCCGATGAAGCACCAGTACGATTTTGATAGCGCCACGGTGATCGGCTTCCTGCGTCAGCATGGCCT GGACCAGGATTTCAAGCTCAATATCGAAGCCAACCACGCCACGCTGTCGGGCCACAGCTTCGAGCACGACCTGCAGGTGG CATCCGACGCCGGCCTGCTCGGCAGCATCGATGCCAACCGCGGCAATCCGCAGAACGGCTGGGACACCGACCAGTTCCCG ACCGACCTGTACGACACCGTCGGCGCCATGCTGGTGGTGCTGCGGCAGGGCGGGCTGGCACCGGGCGGCTTGAACTTCGA TGCCAAGGTGCGTCGCGAATCGTCCGACCCGCAGGACCTGTTCCTGGCCCACATCGGCGGCATGGACGCGTTCGCCCGCG GGCTGGAAGTGGCCAACGCGCTGCTGACCGCCTCGCCGCTGGAACAGTGGCGCGCCGAGCGTTACGCCAGCTTCGACAGC GGCGCGGGCGCGGACTTTGCCGCAGGCAAGACCACATTGGCGGATCTGGCCAAGCATGCGGCCGGCAATGCGCCCCAGCA GATCAGCGGCCGCCAGGAAGCGTATGAAAACCTGATCAATCAGTATCTGACGCGTTGA
Upstream 100 bases:
>100_bases CGCCTGTGCTGGTTGCGCGCGCGCCGCAGTGCGTGGCTGCAGGCGCTCGGTGGCGACGCCTTCCACTGTTCCCCTCCCCT TGACGCAGGAGCTTCACCCC
Downstream 100 bases:
>100_bases GCCTTGCCACTGCACGCGCTTCGCCTCACCTGGCGCGTGCAATGACTGTCTGCATCTCGACGGTGGGCCAGCTACCACAC TGCGGCGGCCAGCACTGGCT
Product: xylose isomerase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 445; Mature: 444
Protein sequence:
>445_residues MSNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHLRFAVAYWHSFCGNGADPFGPGTRAYPWDVG DTALNRAEAKADAAFEFFTKLGVPYYCFHDIDLSPDADDITEYESNLKHMVGVAKQRQADTGIKLLWGTANLFSHPRYMN GASTNPDFNVVARAAVQVKAAIDATVALGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIE PKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFP TDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDS GAGADFAAGKTTLADLAKHAAGNAPQQISGRQEAYENLINQYLTR
Sequences:
>Translated_445_residues MSNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHLRFAVAYWHSFCGNGADPFGPGTRAYPWDVG DTALNRAEAKADAAFEFFTKLGVPYYCFHDIDLSPDADDITEYESNLKHMVGVAKQRQADTGIKLLWGTANLFSHPRYMN GASTNPDFNVVARAAVQVKAAIDATVALGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIE PKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFP TDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDS GAGADFAAGKTTLADLAKHAAGNAPQQISGRQEAYENLINQYLTR >Mature_444_residues SNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHLRFAVAYWHSFCGNGADPFGPGTRAYPWDVGD TALNRAEAKADAAFEFFTKLGVPYYCFHDIDLSPDADDITEYESNLKHMVGVAKQRQADTGIKLLWGTANLFSHPRYMNG ASTNPDFNVVARAAVQVKAAIDATVALGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIEP KPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLLGSIDANRGNPQNGWDTDQFPT DLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDLFLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDSG AGADFAAGKTTLADLAKHAAGNAPQQISGRQEAYENLINQYLTR
Specific function: Unknown
COG id: COG2115
COG function: function code G; Xylose isomerase
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the xylose isomerase family [H]
Homologues:
Organism=Escherichia coli, GI1789988, Length=434, Percent_Identity=52.073732718894, Blast_Score=473, Evalue=1e-135,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013022 - InterPro: IPR012307 - InterPro: IPR013452 - InterPro: IPR001998 [H]
Pfam domain/function: PF01261 AP_endonuc_2 [H]
EC number: =5.3.1.5 [H]
Molecular weight: Translated: 48767; Mature: 48636
Theoretical pI: Translated: 5.27; Mature: 5.27
Prosite motif: PS00172 XYLOSE_ISOMERASE_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.9 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.0 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHLRFAVAYWHSF CCCEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH CGNGADPFGPGTRAYPWDVGDTALNRAEAKADAAFEFFTKLGVPYYCFHDIDLSPDADDI HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH TEYESNLKHMVGVAKQRQADTGIKLLWGTANLFSHPRYMNGASTNPDFNVVARAAVQVKA HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH AIDATVALGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIE HHEEEEEECCCEEEEECCCCCCEEHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC PKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLL CCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCCCCHHHHCCCCCE GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDL EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHH FLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDSGAGADFAAGKTTLADLAKHA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH AGNAPQQISGRQEAYENLINQYLTR CCCCCHHHCCHHHHHHHHHHHHHCC >Mature Secondary Structure SNTVYIGAKEYFPGIGKIGFEGRDSDNPLAFKVYDANKTIGDKTMAEHLRFAVAYWHSF CCEEEEEHHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHH CGNGADPFGPGTRAYPWDVGDTALNRAEAKADAAFEFFTKLGVPYYCFHDIDLSPDADDI HCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHH TEYESNLKHMVGVAKQRQADTGIKLLWGTANLFSHPRYMNGASTNPDFNVVARAAVQVKA HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHH AIDATVALGGENYVFWGGREGYACLHNTQMKREQDNMARFLTLARDYGRSIGFKGNFLIE HHEEEEEECCCEEEEECCCCCCEEHHCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEC PKPMEPMKHQYDFDSATVIGFLRQHGLDQDFKLNIEANHATLSGHSFEHDLQVASDAGLL CCCCCCHHHHCCCCHHHHHHHHHHCCCCCCEEEEEEECCEEECCCCCCCCHHHHCCCCCE GSIDANRGNPQNGWDTDQFPTDLYDTVGAMLVVLRQGGLAPGGLNFDAKVRRESSDPQDL EECCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHCCCCCCHHHH FLAHIGGMDAFARGLEVANALLTASPLEQWRAERYASFDSGAGADFAAGKTTLADLAKHA HHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH AGNAPQQISGRQEAYENLINQYLTR CCCCCHHHCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA