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The map label for this gene is popC [H]

Identifier: 77748695

GI number: 77748695

Start: 3628000

End: 3629481

Strand: Direct

Name: popC [H]

Synonym: XAC3090

Alternate gene names: 77748695

Gene position: 3628000-3629481 (Clockwise)

Preceding gene: 21243816

Following gene: 21243830

Centisome position: 70.1

GC content: 60.53

Gene sequence:

>1482_bases
GTGGGCGCTTCACCATTACGGCGCTCCCCAGCGATTCGCCCGTACCGCGACGTGCTGTCGCAATGGCAACGCCACTACAG
CGCAGATCGCAATCGCTGGCACAGCGCATGGCGCCAGGCCAACAGCAACAACCCGGAGGTCGAGAGAAGAACGAGCCGGG
CGCTGAAGGCGACAACCGACCTGCTGGAGGACGCAACCGCACCGGAGCGGGTCGCGCTGGAGCTGCGCTCAGTTCCGCTG
CCGCAATTTCCCGACCAGGCATTCCGTCTTTCTCATCTGCAACACATGACGATCGACGCGGCAGGGTTGATGGAGCTCCC
GGACACCATGCAGCAATTTGCGGGCCTGGAAACACTGACGCTGGCACGCAATCCGCTTCGCGCGCTACCTGCATCCATCG
CAAGCCTCAGCCGATTACGCGAGCTCTCCATCCGCGCCTGCCCGGAACTGACGGAACTTCCCGAGCACCTGGCAAGCACC
GATGCATCCGGCGAGCACCAGGGCTTGGTCAACCTGCAGAGCCTACGGCTGGAACGGACCGGAATCACATCGCTTCCGGC
GTCCATCGCCAACCTGCAAAATCTGAAAAGCCTAAAGATACGCAACTCGCCGCTGTCCGCCCTTGGCCCGGCCATCCATC
AACTGCCAAAGTTGGAGGAGCTTGATCTGCGGGGCTGCACCGCGCTGCGCAGCTATCCGCCGATTTTCGGCGGCAGTGCG
CCATTGAAGCGACTGATTCTGAAAGACTGCAGCAACCTGCTCACGCTGCCACTGGACATTCACCGCCTGACGCAGCTGGA
AAAACTCGATCTGCGAGGTTGCGTCAATCTCTCCAGACTGCCCTCGTTGATCGCCCGATTACCTGCCAACTGCATCATCC
TGGTGCCGCCGCATCTCCAAGCGCAGCTCGACCAGCATCGTCAGGTTGCGCTCGAACTGAACAAGGTTGCGCTCGAACGC
ATCGAAGACACCGCACAGGCCATGCTGAGCACGGTCATCGATGAGGAAAGAAATCCCTTTCTGGAAGGTGCCCCATCCTA
TCTTCCAGAAAAGCGCCCGCCCGGAACTCCCACCACCTTCGGCGAGATTCCGGTATTGCAGAAAATGCTCGAAGAAAGCA
GGGATCCCCATTTCCTGCAACGCGTGAGCGACATGGCAGGCCCATCCCCCAGAATCGAAGACGAGAGCGAGGAAGGCCTC
CGCCTCCATTACACGAACGTCAGCAACTGGAAGGCGCAGCAGAGCGCGCACCTGGGCATCGTCGATCATCTCGGGCAGTT
CGTTTATCACGAAGCAAGCCAGCTCGACGCAGCGTCGCTGGCCAAGGCAGTCCAGATGTGGAAGACCCGCGAGCTGATCG
TCAACGCACACCCGCAAGACCGTACATCCTTTCCTGACTTCACGCTGCACATTCCCGAGCAGGTCAGCGACGACGCTGAT
GACGAACAGCAAACAAGCCCGGCACCTTCACGCGATCAGTAA

Upstream 100 bases:

>100_bases
GGAATTGCCACAGCTCAGCGACATAGAACGCGCTCGCTTCCACTCCGTCACCACCGATTCGCAACGCTTGCGGCCGTAGG
GCCCCCGCATGCCACCGACC

Downstream 100 bases:

>100_bases
AGGGCAAACACGAGATGCGCCGTCGCCAATCGAGCATCGCCGTCATGTGCCTGCGCAAGTCAGGCGGCGCATCCCCGGCC
GAACGGGGCGTTGCGCGCGT

Product: leucin rich protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 493; Mature: 492

Protein sequence:

>493_residues
MGASPLRRSPAIRPYRDVLSQWQRHYSADRNRWHSAWRQANSNNPEVERRTSRALKATTDLLEDATAPERVALELRSVPL
PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLSRLRELSIRACPELTELPEHLAST
DASGEHQGLVNLQSLRLERTGITSLPASIANLQNLKSLKIRNSPLSALGPAIHQLPKLEELDLRGCTALRSYPPIFGGSA
PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIARLPANCIILVPPHLQAQLDQHRQVALELNKVALER
IEDTAQAMLSTVIDEERNPFLEGAPSYLPEKRPPGTPTTFGEIPVLQKMLEESRDPHFLQRVSDMAGPSPRIEDESEEGL
RLHYTNVSNWKAQQSAHLGIVDHLGQFVYHEASQLDAASLAKAVQMWKTRELIVNAHPQDRTSFPDFTLHIPEQVSDDAD
DEQQTSPAPSRDQ

Sequences:

>Translated_493_residues
MGASPLRRSPAIRPYRDVLSQWQRHYSADRNRWHSAWRQANSNNPEVERRTSRALKATTDLLEDATAPERVALELRSVPL
PQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLSRLRELSIRACPELTELPEHLAST
DASGEHQGLVNLQSLRLERTGITSLPASIANLQNLKSLKIRNSPLSALGPAIHQLPKLEELDLRGCTALRSYPPIFGGSA
PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIARLPANCIILVPPHLQAQLDQHRQVALELNKVALER
IEDTAQAMLSTVIDEERNPFLEGAPSYLPEKRPPGTPTTFGEIPVLQKMLEESRDPHFLQRVSDMAGPSPRIEDESEEGL
RLHYTNVSNWKAQQSAHLGIVDHLGQFVYHEASQLDAASLAKAVQMWKTRELIVNAHPQDRTSFPDFTLHIPEQVSDDAD
DEQQTSPAPSRDQ
>Mature_492_residues
GASPLRRSPAIRPYRDVLSQWQRHYSADRNRWHSAWRQANSNNPEVERRTSRALKATTDLLEDATAPERVALELRSVPLP
QFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLSRLRELSIRACPELTELPEHLASTD
ASGEHQGLVNLQSLRLERTGITSLPASIANLQNLKSLKIRNSPLSALGPAIHQLPKLEELDLRGCTALRSYPPIFGGSAP
LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIARLPANCIILVPPHLQAQLDQHRQVALELNKVALERI
EDTAQAMLSTVIDEERNPFLEGAPSYLPEKRPPGTPTTFGEIPVLQKMLEESRDPHFLQRVSDMAGPSPRIEDESEEGLR
LHYTNVSNWKAQQSAHLGIVDHLGQFVYHEASQLDAASLAKAVQMWKTRELIVNAHPQDRTSFPDFTLHIPEQVSDDADD
EQQTSPAPSRDQ

Specific function: Probably involved in host-pathogen interactions. May interact with plant target proteins; may modulate a plant signal transduction pathway [H]

COG id: COG4886

COG function: function code S; Leucine-rich repeat (LRR) protein

Gene ontology:

Cell location: Secreted [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 22 LRR (leucine-rich) repeats [H]

Homologues:

Organism=Homo sapiens, GI95113664, Length=233, Percent_Identity=33.0472103004292, Blast_Score=79, Evalue=7e-15,
Organism=Homo sapiens, GI110825984, Length=354, Percent_Identity=29.0960451977401, Blast_Score=76, Evalue=6e-14,
Organism=Homo sapiens, GI55770895, Length=217, Percent_Identity=29.9539170506912, Blast_Score=71, Evalue=2e-12,
Organism=Homo sapiens, GI8923909, Length=217, Percent_Identity=29.9539170506912, Blast_Score=71, Evalue=3e-12,
Organism=Homo sapiens, GI16904383, Length=215, Percent_Identity=30.6976744186047, Blast_Score=69, Evalue=8e-12,
Organism=Homo sapiens, GI45827729, Length=214, Percent_Identity=30.3738317757009, Blast_Score=67, Evalue=4e-11,
Organism=Homo sapiens, GI45827731, Length=214, Percent_Identity=30.3738317757009, Blast_Score=67, Evalue=5e-11,
Organism=Caenorhabditis elegans, GI71991525, Length=201, Percent_Identity=30.3482587064677, Blast_Score=69, Evalue=8e-12,
Organism=Caenorhabditis elegans, GI71991531, Length=201, Percent_Identity=30.3482587064677, Blast_Score=69, Evalue=8e-12,
Organism=Drosophila melanogaster, GI116007092, Length=274, Percent_Identity=31.021897810219, Blast_Score=74, Evalue=3e-13,
Organism=Drosophila melanogaster, GI24650334, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI24650332, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281362653, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=4e-13,
Organism=Drosophila melanogaster, GI281362651, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24650330, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281362657, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI281362655, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI24650336, Length=274, Percent_Identity=31.021897810219, Blast_Score=73, Evalue=5e-13,
Organism=Drosophila melanogaster, GI62472958, Length=274, Percent_Identity=31.021897810219, Blast_Score=72, Evalue=8e-13,
Organism=Drosophila melanogaster, GI19922706, Length=269, Percent_Identity=26.7657992565056, Blast_Score=67, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001611 [H]

Pfam domain/function: PF00560 LRR_1 [H]

EC number: NA

Molecular weight: Translated: 55105; Mature: 54974

Theoretical pI: Translated: 6.56; Mature: 6.56

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGASPLRRSPAIRPYRDVLSQWQRHYSADRNRWHSAWRQANSNNPEVERRTSRALKATTD
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LLEDATAPERVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT
HHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHCCCHHHH
LARNPLRALPASIASLSRLRELSIRACPELTELPEHLASTDASGEHQGLVNLQSLRLERT
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
GITSLPASIANLQNLKSLKIRNSPLSALGPAIHQLPKLEELDLRGCTALRSYPPIFGGSA
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCH
PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIARLPANCIILVPPHLQ
HHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHH
AQLDQHRQVALELNKVALERIEDTAQAMLSTVIDEERNPFLEGAPSYLPEKRPPGTPTTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GEIPVLQKMLEESRDPHFLQRVSDMAGPSPRIEDESEEGLRLHYTNVSNWKAQQSAHLGI
CCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCHH
VDHLGQFVYHEASQLDAASLAKAVQMWKTRELIVNAHPQDRTSFPDFTLHIPEQVSDDAD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEECCHHHCCCCC
DEQQTSPAPSRDQ
CHHHCCCCCCCCC
>Mature Secondary Structure 
GASPLRRSPAIRPYRDVLSQWQRHYSADRNRWHSAWRQANSNNPEVERRTSRALKATTD
CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
LLEDATAPERVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLT
HHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCHHHHHHCHHHHHHHCCCHHHH
LARNPLRALPASIASLSRLRELSIRACPELTELPEHLASTDASGEHQGLVNLQSLRLERT
HHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHC
GITSLPASIANLQNLKSLKIRNSPLSALGPAIHQLPKLEELDLRGCTALRSYPPIFGGSA
CCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCHHHHHHHCCCCCCCCCH
PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIARLPANCIILVPPHLQ
HHHHHHHHHHHHHEECCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCEEEEECCHHH
AQLDQHRQVALELNKVALERIEDTAQAMLSTVIDEERNPFLEGAPSYLPEKRPPGTPTTF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
GEIPVLQKMLEESRDPHFLQRVSDMAGPSPRIEDESEEGLRLHYTNVSNWKAQQSAHLGI
CCCHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEECCCCCCHHHHHCCCHH
VDHLGQFVYHEASQLDAASLAKAVQMWKTRELIVNAHPQDRTSFPDFTLHIPEQVSDDAD
HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHEECCCCCCCCCCCEEEECCHHHCCCCC
DEQQTSPAPSRDQ
CHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10792715; 11823852 [H]