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The map label for this gene is ycdI [C]

Identifier: 77748536

GI number: 77748536

Start: 656263

End: 656853

Strand: Direct

Name: ycdI [C]

Synonym: XAC0554

Alternate gene names: 77748536

Gene position: 656263-656853 (Clockwise)

Preceding gene: 21241323

Following gene: 21241326

Centisome position: 12.68

GC content: 65.82

Gene sequence:

>591_bases
ATGTCCGACTCGCTCAACGCCGCCGCACTGGATCAGCTGTTCCGCACCGCCCGCACGCAGAATGCGTTTGCCGACACGCC
GGTCAGCCACGAGGTGCTGCGTGAGCTGTATGAGCTGGTGAAGTGGGGGCCCACCGCGGCCAATAGCTGTCCGGCGCGCT
TTGTGTTCGTGACCAGCGCCGAAGGCAAGGCCAAGCTCAAGCCGGCGCTGTCGGAGGGCAATGCCGCCAAGACGCTGGCC
GCACCGGTGACGGTGATCGTGGCGCACGACGAAGACTTCCACGAGAAGCTGCCGTATCTGTTCCCACATGCCGACGCCAA
GAGCTGGTTCGACGGCCCGCGCGAGGGCCGCACCGAATCGGCGTTCCGCAATGGCTCGCTGCAGGGCGCCTACCTGATCC
TGGCCGCGCGTGCGCTGGGACTGGATGCCGGCCCGATGTCCGGCTTCGATAATGCGAAGGTGGATGCGGCGTTCTTTGCC
GGCACGCCGATCAAGTCCAACTTCCTGGTCAATCTCGGCTATGGCGACCCGGCCGGGCTGTTCCCGCGTTCGCCACGCCT
GAGCTTCGACGAAGCGGCACGTTTCGAGTAA

Upstream 100 bases:

>100_bases
GAACGCGTGTGGCGGCAATCGCGCCACTCTACACTGCGGGTCTTCACACTGGCGCCGACGCCGCAGCCTACCGTCGCACC
ACCCTTCCTCTGGAGTGCTC

Downstream 100 bases:

>100_bases
GGGATGCATGCGTTCCGACTGCGGCACAGCGCCGTGGACGGCGCGCGTCGGCCCGGCACACTGCGTGTGCCTGCCACGTT
CAAGCGACGCCGTTGGCCGT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 196; Mature: 195

Protein sequence:

>196_residues
MSDSLNAAALDQLFRTARTQNAFADTPVSHEVLRELYELVKWGPTAANSCPARFVFVTSAEGKAKLKPALSEGNAAKTLA
APVTVIVAHDEDFHEKLPYLFPHADAKSWFDGPREGRTESAFRNGSLQGAYLILAARALGLDAGPMSGFDNAKVDAAFFA
GTPIKSNFLVNLGYGDPAGLFPRSPRLSFDEAARFE

Sequences:

>Translated_196_residues
MSDSLNAAALDQLFRTARTQNAFADTPVSHEVLRELYELVKWGPTAANSCPARFVFVTSAEGKAKLKPALSEGNAAKTLA
APVTVIVAHDEDFHEKLPYLFPHADAKSWFDGPREGRTESAFRNGSLQGAYLILAARALGLDAGPMSGFDNAKVDAAFFA
GTPIKSNFLVNLGYGDPAGLFPRSPRLSFDEAARFE
>Mature_195_residues
SDSLNAAALDQLFRTARTQNAFADTPVSHEVLRELYELVKWGPTAANSCPARFVFVTSAEGKAKLKPALSEGNAAKTLAA
PVTVIVAHDEDFHEKLPYLFPHADAKSWFDGPREGRTESAFRNGSLQGAYLILAARALGLDAGPMSGFDNAKVDAAFFAG
TPIKSNFLVNLGYGDPAGLFPRSPRLSFDEAARFE

Specific function: Unknown

COG id: COG0778

COG function: function code C; Nitroreductase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nitroreductase family. HadB/RutE subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787243, Length=193, Percent_Identity=59.5854922279793, Blast_Score=244, Evalue=2e-66,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000415 [H]

Pfam domain/function: PF00881 Nitroreductase [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 21107; Mature: 20976

Theoretical pI: Translated: 6.12; Mature: 6.12

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.5 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
0.5 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDSLNAAALDQLFRTARTQNAFADTPVSHEVLRELYELVKWGPTAANSCPARFVFVTSA
CCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
EGKAKLKPALSEGNAAKTLAAPVTVIVAHDEDFHEKLPYLFPHADAKSWFDGPREGRTES
CCCCEECCCCCCCCCCCEEECCEEEEEECCCCHHHHCCCCCCCCCCHHHCCCCCCCCCHH
AFRNGSLQGAYLILAARALGLDAGPMSGFDNAKVDAAFFAGTPIKSNFLVNLGYGDPAGL
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCC
FPRSPRLSFDEAARFE
CCCCCCCCHHHHCCCC
>Mature Secondary Structure 
SDSLNAAALDQLFRTARTQNAFADTPVSHEVLRELYELVKWGPTAANSCPARFVFVTSA
CCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEEECC
EGKAKLKPALSEGNAAKTLAAPVTVIVAHDEDFHEKLPYLFPHADAKSWFDGPREGRTES
CCCCEECCCCCCCCCCCEEECCEEEEEECCCCHHHHCCCCCCCCCCHHHCCCCCCCCCHH
AFRNGSLQGAYLILAARALGLDAGPMSGFDNAKVDAAFFAGTPIKSNFLVNLGYGDPAGL
HHHCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCCEEEECCCCCCCCC
FPRSPRLSFDEAARFE
CCCCCCCCHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: Fmn (Potential) [C]

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA