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The map label for this gene is lsrC [H]

Identifier: 77465504

GI number: 77465504

Start: 581156

End: 582166

Strand: Reverse

Name: lsrC [H]

Synonym: RSP_3502

Alternate gene names: 77465504

Gene position: 582166-581156 (Counterclockwise)

Preceding gene: 77465505

Following gene: 77465503

Centisome position: 61.73

GC content: 70.52

Gene sequence:

>1011_bases
ATGCTTGACCGCATCGCCCGCGACCGGGTCGCGACGCTCTTCATCGTGACCGTCCTCGTCCTTCTGGCCGTGGGCGCGGC
CGCACCGGGGTTCCTCTCGGTCCGCACCGCCGGCATCATCTGGTCGAACGGCCTCGTCCTCATGCTGGTGGCGCTGGGGA
TCTTCCCCGTCATCCTCACGCGCAACATCGACGTCTCGGGGGGATCGGTGCTGGGCCTCTCGGCCGTCACGCTGGGCCTC
ACGCTGAACCAGGGCCTGCCGCTGCCGCTGGCCTCCGCCGCGGCGGTGGGGACGGGCATCCTTGCCGGGGCGCTGAGCGG
GCTTCTCGTCGCCGTGCTGCGCGTGCCCTCGATCGTGGCGACGCTCGGCACGCTCGGTCTCTTCCGCGGCGTGATGCTGA
TCGCCACGGGCGGCGAATGGATCGAGGATCTGCCCGAGGATCTGAAGGCGCTCGGCGCCAAGTCCTTCGCGGGCCTCTCG
GTGATGGGCATGGTGACGGCCGCGGCCATTGTCGCCGTCTGGCTGTTCCTCCGCTCGCGCCGGGGCGGCTGGGTCTTCGT
CACCGGCGACAACCGCGCGGCCGCGCACCATCTGGGCCTGCCGGTGAAGTGGATCGAGTTTCTGGTCTTCGTCTGGGGTG
GCGCGATGTATGCGCTGGCGGGCATCGCCTTCGCGGCACAGATCGGCTTCGTGCCGAACCAGGCCGGCAGCGGGATCGAG
CTGCGCGCCATCGCGGCGCTGGTGCTGGGCGGGGTCAGCCTTCTGGGCGGCGTGGGCACCGTGGCGGGCGTGGTGATCGG
CGTGATCTTCTTCACCTCGATCGACACCTCGCTCGTCTTCCTGCGCATCCCCGCCTACTGGAACGACCTGATCGGCGGCG
CCATGCTGCTTGCCGTTCTCCTGATCGACGGGCGGCTGCGCATCGCGCTCGAGGCCCGAGACCGCGCAGCGCGCTACCGC
CGCTCGAGCCACAGGATCTCGCCCGCCCGCGATCTGGAGGATGCCGCATGA

Upstream 100 bases:

>100_bases
ATCGCCGTCATGGCCGGCGGGCATCTGGCGGGAGAGCTCCCGGCGGGCGCCTCGACCGACGAGATCGCCCAACTCGCCTT
CGAGGCCGGGGAGGCCGCCC

Downstream 100 bases:

>100_bases
ACCGCCATCTGATGCGCTGGGAGGTGCTGCTCCTCCTGATCCTGCTGGCCGAGCTTGCCATCTTCGGCATGATCAACCCG
CGCTTCCTCAGACCCTCGTC

Product: ABC sugar transporter, inner membrane subunit

Products: NA

Alternate protein names: AI-2 import system permease protein lsrC [H]

Number of amino acids: Translated: 336; Mature: 336

Protein sequence:

>336_residues
MLDRIARDRVATLFIVTVLVLLAVGAAAPGFLSVRTAGIIWSNGLVLMLVALGIFPVILTRNIDVSGGSVLGLSAVTLGL
TLNQGLPLPLASAAAVGTGILAGALSGLLVAVLRVPSIVATLGTLGLFRGVMLIATGGEWIEDLPEDLKALGAKSFAGLS
VMGMVTAAAIVAVWLFLRSRRGGWVFVTGDNRAAAHHLGLPVKWIEFLVFVWGGAMYALAGIAFAAQIGFVPNQAGSGIE
LRAIAALVLGGVSLLGGVGTVAGVVIGVIFFTSIDTSLVFLRIPAYWNDLIGGAMLLAVLLIDGRLRIALEARDRAARYR
RSSHRISPARDLEDAA

Sequences:

>Translated_336_residues
MLDRIARDRVATLFIVTVLVLLAVGAAAPGFLSVRTAGIIWSNGLVLMLVALGIFPVILTRNIDVSGGSVLGLSAVTLGL
TLNQGLPLPLASAAAVGTGILAGALSGLLVAVLRVPSIVATLGTLGLFRGVMLIATGGEWIEDLPEDLKALGAKSFAGLS
VMGMVTAAAIVAVWLFLRSRRGGWVFVTGDNRAAAHHLGLPVKWIEFLVFVWGGAMYALAGIAFAAQIGFVPNQAGSGIE
LRAIAALVLGGVSLLGGVGTVAGVVIGVIFFTSIDTSLVFLRIPAYWNDLIGGAMLLAVLLIDGRLRIALEARDRAARYR
RSSHRISPARDLEDAA
>Mature_336_residues
MLDRIARDRVATLFIVTVLVLLAVGAAAPGFLSVRTAGIIWSNGLVLMLVALGIFPVILTRNIDVSGGSVLGLSAVTLGL
TLNQGLPLPLASAAAVGTGILAGALSGLLVAVLRVPSIVATLGTLGLFRGVMLIATGGEWIEDLPEDLKALGAKSFAGLS
VMGMVTAAAIVAVWLFLRSRRGGWVFVTGDNRAAAHHLGLPVKWIEFLVFVWGGAMYALAGIAFAAQIGFVPNQAGSGIE
LRAIAALVLGGVSLLGGVGTVAGVVIGVIFFTSIDTSLVFLRIPAYWNDLIGGAMLLAVLLIDGRLRIALEARDRAARYR
RSSHRISPARDLEDAA

Specific function: Part of the ABC transporter complex lsrABCD involved in autoinducer 2 (AI-2) import. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the binding-protein-dependent transport system permease family. AraH/rbsC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1787793, Length=335, Percent_Identity=48.3582089552239, Blast_Score=255, Evalue=3e-69,
Organism=Escherichia coli, GI1788896, Length=309, Percent_Identity=31.0679611650485, Blast_Score=102, Evalue=4e-23,
Organism=Escherichia coli, GI1790524, Length=298, Percent_Identity=30.2013422818792, Blast_Score=101, Evalue=6e-23,
Organism=Escherichia coli, GI87082395, Length=301, Percent_Identity=31.2292358803987, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1790191, Length=308, Percent_Identity=31.1688311688312, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI145693152, Length=278, Percent_Identity=28.7769784172662, Blast_Score=97, Evalue=2e-21,
Organism=Escherichia coli, GI1789992, Length=336, Percent_Identity=29.4642857142857, Blast_Score=96, Evalue=3e-21,
Organism=Escherichia coli, GI1787794, Length=291, Percent_Identity=29.2096219931272, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI145693214, Length=273, Percent_Identity=31.1355311355311, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1788471, Length=311, Percent_Identity=31.5112540192926, Blast_Score=71, Evalue=1e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001851 [H]

Pfam domain/function: PF02653 BPD_transp_2 [H]

EC number: NA

Molecular weight: Translated: 34805; Mature: 34805

Theoretical pI: Translated: 10.95; Mature: 10.95

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLDRIARDRVATLFIVTVLVLLAVGAAAPGFLSVRTAGIIWSNGLVLMLVALGIFPVILT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHH
RNIDVSGGSVLGLSAVTLGLTLNQGLPLPLASAAAVGTGILAGALSGLLVAVLRVPSIVA
CCCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLFRGVMLIATGGEWIEDLPEDLKALGAKSFAGLSVMGMVTAAAIVAVWLFLRSR
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCC
RGGWVFVTGDNRAAAHHLGLPVKWIEFLVFVWGGAMYALAGIAFAAQIGFVPNQAGSGIE
CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
LRAIAALVLGGVSLLGGVGTVAGVVIGVIFFTSIDTSLVFLRIPAYWNDLIGGAMLLAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHH
LIDGRLRIALEARDRAARYRRSSHRISPARDLEDAA
HHCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure
MLDRIARDRVATLFIVTVLVLLAVGAAAPGFLSVRTAGIIWSNGLVLMLVALGIFPVILT
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCHHHHHHHHHHHHHHHH
RNIDVSGGSVLGLSAVTLGLTLNQGLPLPLASAAAVGTGILAGALSGLLVAVLRVPSIVA
CCCCCCCCCCHHHHHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
TLGTLGLFRGVMLIATGGEWIEDLPEDLKALGAKSFAGLSVMGMVTAAAIVAVWLFLRSR
HHHHHHHHHHHEEEECCCHHHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHHHHCC
RGGWVFVTGDNRAAAHHLGLPVKWIEFLVFVWGGAMYALAGIAFAAQIGFVPNQAGSGIE
CCCEEEEECCCCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCH
LRAIAALVLGGVSLLGGVGTVAGVVIGVIFFTSIDTSLVFLRIPAYWNDLIGGAMLLAVL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHH
LIDGRLRIALEARDRAARYRRSSHRISPARDLEDAA
HHCCCEEEEEEHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA