| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77461920
Identifier: 77461920
GI number: 77461920
Start: 6389822
End: 6391138
Strand: Reverse
Name: 77461920
Synonym: Pfl01_5700
Alternate gene names: NA
Gene position: 6391138-6389822 (Counterclockwise)
Preceding gene: 77461922
Following gene: 77461919
Centisome position: 99.27
GC content: 48.82
Gene sequence:
>1317_bases ATGTCGATACGTCATGCCTCGCCGCTAAACAGCATTGCGGTTGCCGTACTGCTAAGTGCAGGAACTTTGATGTCGGTGTC GCCGTTTGCGCACGCGCAAAACGGTGCGACCGCTACAGTAGGCGCTGTAGTAGGCGACACAGCAATTCGGCCATTCAAAG TCGAGATTCCGGAAGATGCGATAATTGATCTTAAGAAACGCGTCCTGGCCACTCGCTGGCCAGATCCGGAAACCGTAAAA GATCAGTCACAAGGCGTCCAACAAGATAAGCTAAAGGCTTTGGTTGATTATTGGGGTAAAGATTACGACTGGCATAAAGT CCAAAACAAGCTAAACGCACTTCCCATGTATATCACGCGGATTGACGGAGTGGATATCCAGTTCATCCATGTCAAATCTA AACATCCTAACGCTTTACCGTTGCTATTGACCCATGGGTGGCCAGGTTCGATCCTGGAATTCACCAAATCGATCGCACCT CTTACAGATCCGACTTCCTACGGTGGGCGTGCAGAAGATGCCTTTGATGTAATAATTCCTTCAATGCCAGGATATGGCTT TTCACAACGCCCTACTGAGGGTGGTTGGGGGCCAGAGCGGATGGGGGCGGCATGGGATGTGCTGATGAAGCGTTTGGGTT ATAAAAACTATGTTTCTCAGGGAGGGGATTGGGGCTCTGTAGTGGCGGATGCAATGGGACGCCAAGCTCCTTCGGGGTTG CGAGCAATCCATGTAAATATGCCAGCCACCGTTCCACCTGAGATCGCGCGGGCAATCAATGACGGGACACCTCCTCCTGC AGGAATCACTCCGGAAGAAAAGGCAGCTTACCAGTCCCTAAAAGATTTCTTCGGTAAGAATGCTGCTTACGGTTCTATGA TGAGCACACGCCCGCAAACAGTTGGATATGCATTGAGCGACTCCCCTGCAGGGCTCGCCGCCTGGATCTTTGATAAATTT AATCAGTGGACTTACAGCGGCGGCGATGCGGAAAAGTCATTGAGTAAGGACGAGATGCTGGACGATATCTCTCTGTATTG GCTTACTAATAGTGCTGTTTCATCTGCACGTCTATACTGGGAAAACAATAATAATAATTTCAATTCTGTCGAGCAAAAAA CACGCGAAATTAAGGTTCCAGTAGCGGTTACTGTTTTTCCGGGTGAAATCTATCAGGCACCGAAGACCTGGGCTGAACGA GCTTACCCAACGCTAAAATATTACAATGTTGTTAATAAAGGCGGGCATTTTGCAGCCTGGGAAGAGCCAGAGCTTTTTGC TTCTGAGCTGCGTAAAGCTTTCAAACCATATAGATAA
Upstream 100 bases:
>100_bases GTGCAAGCTGATACCTTGGTGTAATACCTAAGGTGAAACAGGGAAGTAGACTTCAAGGGCAACTCAAACCACAGAAAAGA AACAAAAAAGGATAATCGTT
Downstream 100 bases:
>100_bases TTATAGCTAGTTGATTCATGCCTTTTGTATAATTTTTCGTTTGCTTTGACGATTGATCTATCATGAGGCATGACTCTATT GTTTAATTATCGCCGTATAA
Product: epoxide hydrolase-like protein
Products: NA
Alternate protein names: Epoxide hydratase [H]
Number of amino acids: Translated: 438; Mature: 437
Protein sequence:
>438_residues MSIRHASPLNSIAVAVLLSAGTLMSVSPFAHAQNGATATVGAVVGDTAIRPFKVEIPEDAIIDLKKRVLATRWPDPETVK DQSQGVQQDKLKALVDYWGKDYDWHKVQNKLNALPMYITRIDGVDIQFIHVKSKHPNALPLLLTHGWPGSILEFTKSIAP LTDPTSYGGRAEDAFDVIIPSMPGYGFSQRPTEGGWGPERMGAAWDVLMKRLGYKNYVSQGGDWGSVVADAMGRQAPSGL RAIHVNMPATVPPEIARAINDGTPPPAGITPEEKAAYQSLKDFFGKNAAYGSMMSTRPQTVGYALSDSPAGLAAWIFDKF NQWTYSGGDAEKSLSKDEMLDDISLYWLTNSAVSSARLYWENNNNNFNSVEQKTREIKVPVAVTVFPGEIYQAPKTWAER AYPTLKYYNVVNKGGHFAAWEEPELFASELRKAFKPYR
Sequences:
>Translated_438_residues MSIRHASPLNSIAVAVLLSAGTLMSVSPFAHAQNGATATVGAVVGDTAIRPFKVEIPEDAIIDLKKRVLATRWPDPETVK DQSQGVQQDKLKALVDYWGKDYDWHKVQNKLNALPMYITRIDGVDIQFIHVKSKHPNALPLLLTHGWPGSILEFTKSIAP LTDPTSYGGRAEDAFDVIIPSMPGYGFSQRPTEGGWGPERMGAAWDVLMKRLGYKNYVSQGGDWGSVVADAMGRQAPSGL RAIHVNMPATVPPEIARAINDGTPPPAGITPEEKAAYQSLKDFFGKNAAYGSMMSTRPQTVGYALSDSPAGLAAWIFDKF NQWTYSGGDAEKSLSKDEMLDDISLYWLTNSAVSSARLYWENNNNNFNSVEQKTREIKVPVAVTVFPGEIYQAPKTWAER AYPTLKYYNVVNKGGHFAAWEEPELFASELRKAFKPYR >Mature_437_residues SIRHASPLNSIAVAVLLSAGTLMSVSPFAHAQNGATATVGAVVGDTAIRPFKVEIPEDAIIDLKKRVLATRWPDPETVKD QSQGVQQDKLKALVDYWGKDYDWHKVQNKLNALPMYITRIDGVDIQFIHVKSKHPNALPLLLTHGWPGSILEFTKSIAPL TDPTSYGGRAEDAFDVIIPSMPGYGFSQRPTEGGWGPERMGAAWDVLMKRLGYKNYVSQGGDWGSVVADAMGRQAPSGLR AIHVNMPATVPPEIARAINDGTPPPAGITPEEKAAYQSLKDFFGKNAAYGSMMSTRPQTVGYALSDSPAGLAAWIFDKFN QWTYSGGDAEKSLSKDEMLDDISLYWLTNSAVSSARLYWENNNNNFNSVEQKTREIKVPVAVTVFPGEIYQAPKTWAERA YPTLKYYNVVNKGGHFAAWEEPELFASELRKAFKPYR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S33 family [H]
Homologues:
Organism=Homo sapiens, GI4503583, Length=415, Percent_Identity=36.3855421686747, Blast_Score=282, Evalue=4e-76, Organism=Homo sapiens, GI209862837, Length=415, Percent_Identity=36.3855421686747, Blast_Score=282, Evalue=4e-76, Organism=Caenorhabditis elegans, GI17564944, Length=443, Percent_Identity=32.5056433408578, Blast_Score=224, Evalue=5e-59, Organism=Caenorhabditis elegans, GI193207462, Length=410, Percent_Identity=26.8292682926829, Blast_Score=135, Evalue=4e-32, Organism=Drosophila melanogaster, GI24655327, Length=413, Percent_Identity=32.2033898305085, Blast_Score=195, Evalue=5e-50, Organism=Drosophila melanogaster, GI20130139, Length=409, Percent_Identity=30.8068459657702, Blast_Score=190, Evalue=1e-48, Organism=Drosophila melanogaster, GI19922580, Length=406, Percent_Identity=30.5418719211823, Blast_Score=190, Evalue=2e-48,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: =3.3.2.10 [H]
Molecular weight: Translated: 48259; Mature: 48128
Theoretical pI: Translated: 7.31; Mature: 7.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSIRHASPLNSIAVAVLLSAGTLMSVSPFAHAQNGATATVGAVVGDTAIRPFKVEIPEDA CCCCCCCCHHHHHHHHHHHCCCCEECCCCHHCCCCCCEEHHHHHCCCCCCCEEEECCCHH IIDLKKRVLATRWPDPETVKDQSQGVQQDKLKALVDYWGKDYDWHKVQNKLNALPMYITR HHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEE IDGVDIQFIHVKSKHPNALPLLLTHGWPGSILEFTKSIAPLTDPTSYGGRAEDAFDVIIP ECCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC SMPGYGFSQRPTEGGWGPERMGAAWDVLMKRLGYKNYVSQGGDWGSVVADAMGRQAPSGL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCCCCCC RAIHVNMPATVPPEIARAINDGTPPPAGITPEEKAAYQSLKDFFGKNAAYGSMMSTRPQT EEEEECCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCC VGYALSDSPAGLAAWIFDKFNQWTYSGGDAEKSLSKDEMLDDISLYWLTNSAVSSARLYW CEEEECCCCCHHHHHHHHHHCCCEECCCCHHHHCCHHHHHHCEEEEEEECCCCCCEEEEE ENNNNNFNSVEQKTREIKVPVAVTVFPGEIYQAPKTWAERAYPTLKYYNVVNKGGHFAAW ECCCCCCHHHHHHHHEEECCEEEEEECHHHHHCCHHHHHHCCCCEEEHHHHCCCCCCCCC EEPELFASELRKAFKPYR CCHHHHHHHHHHHHCCCC >Mature Secondary Structure SIRHASPLNSIAVAVLLSAGTLMSVSPFAHAQNGATATVGAVVGDTAIRPFKVEIPEDA CCCCCCCHHHHHHHHHHHCCCCEECCCCHHCCCCCCEEHHHHHCCCCCCCEEEECCCHH IIDLKKRVLATRWPDPETVKDQSQGVQQDKLKALVDYWGKDYDWHKVQNKLNALPMYITR HHHHHHHHHHHCCCCCCCHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHCCCCEEEEE IDGVDIQFIHVKSKHPNALPLLLTHGWPGSILEFTKSIAPLTDPTSYGGRAEDAFDVIIP ECCCEEEEEEEECCCCCCCEEEEECCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEC SMPGYGFSQRPTEGGWGPERMGAAWDVLMKRLGYKNYVSQGGDWGSVVADAMGRQAPSGL CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHCCCCHHHHHHHHHCCCCCCCC RAIHVNMPATVPPEIARAINDGTPPPAGITPEEKAAYQSLKDFFGKNAAYGSMMSTRPQT EEEEECCCCCCCHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHHCCCCC VGYALSDSPAGLAAWIFDKFNQWTYSGGDAEKSLSKDEMLDDISLYWLTNSAVSSARLYW CEEEECCCCCHHHHHHHHHHCCCEECCCCHHHHCCHHHHHHCEEEEEEECCCCCCEEEEE ENNNNNFNSVEQKTREIKVPVAVTVFPGEIYQAPKTWAERAYPTLKYYNVVNKGGHFAAW ECCCCCCHHHHHHHHEEECCEEEEEECHHHHHCCHHHHHHCCCCEEEHHHHCCCCCCCCC EEPELFASELRKAFKPYR CCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8226695 [H]