| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77461919
Identifier: 77461919
GI number: 77461919
Start: 6388266
End: 6389585
Strand: Reverse
Name: 77461919
Synonym: Pfl01_5699
Alternate gene names: NA
Gene position: 6389585-6388266 (Counterclockwise)
Preceding gene: 77461920
Following gene: 77461915
Centisome position: 99.24
GC content: 50.45
Gene sequence:
>1320_bases ATGTCTGAAAAAGTTAGCCAAAAAAAACCTTTAGACCGCTTGGTCGTCACTTCTTATACCAATGGAATTATCGGCCCCAG CCAGACGATGCTAGGTCCTTTGGCTGATGGCGGCACATTAGTCACAGGCACGCCACCCGGGTGCTGGGGGCCGATGATCA CTCCAGCCTTCCAAGGTGGGCATGAGGTTACGAAGCCTGTTGCGATAGTCGGAGCGGAGATCGGCGATGCGGTAGCGTTG AAAATAACCCGAATAAGTGTCACCTCTATTGCGACCTCCTCCGGAGTAATGAAATTTGTCGAAGGGCGTTATCACGATGA CCCGTTTGTTTCAAAATTTTGCTCTGAGTGTGGCATTGAGCGTCCCGCGAGTCATGTCGAGGGAATTGGAGAAGACGCGA TTCGTTGCAATAACTGTGGAGCAGAGGTCAACGCATTCCGCTTCAGCAATGGCTACGTAATAGTTCTTGATCATGAAAAC CAGATTAGCCTAACGGTCAATCAAGAAGTTGCTAATCGTCTAGCTGGAAAAGCGTCAGAGATGTCGGCGCTTCCGGAGCT AGCTCAGCAGCACTCGATTTTATCCCTAGCTCGTGCCGATATGCCTGGCGTCGCTGCTCATATGCGCCCGTTCCTGGGAA ATATAGGCACTACTCCATCAAGAGATCTACCAGATTCGCACAATTGCGCGGACTTTGGCCAATACCTCATTGGTGCGAAT CATCAATATGGCATGACTCGTGAAGAGTTACACGGTGCTAAAACCGACGGCCATATGGACACCAATTCAGTGCGTGAAGG CTGCATTCTTATTTGTCCAGTTAAAGTGCCTGGCGCCGGTGTTTACATGGGGGATATGCATGCACAGCAAGGGAACGGGG AAATCGCCGGCCATGCTACTGACGTTTCAGGTGAGACTGAGCTTACGGTGGAGGTGATTAAAGGTTTAACGATTGAAGGA CCGATATTGCTGCAGAATATAGATGATCTTCCCCCGATGGCTCGGCCTATGGATTGCGTGCAGAGGCAAAAGGCAAGGGA GCTTGGATTAAAATGGGGGCAACTTGAGCTCGAAGACAACGGCCCAATTACTTTTCTCGGCAGCGGAGAAAATCTGAACG CGGCAACGGAGAATGGGCTCAACCGAGCGGCCTCCGTGACAGGGTTGTCCTATGATGAAGTGCGCAACCGCGCAACCATC ACAGGTTCTATAGAAATTAGTCGTCTTCCCGGAACTGTGCGAGTTACCTTTCTTTGCCCGCTTAGTATTCTCGATCGAAT GGGGATTGGTCATCTTGTACGGCAGAAATATCAACTATGA
Upstream 100 bases:
>100_bases ACTCAATAATTCTTGAGCCGTGCAGCCGGCAATTTCGCCGCGAAATTCGAGAGTGCTCATGTTTCTTTAATCGAAAGCAG CATTGATAAAAGGTATTTTT
Downstream 100 bases:
>100_bases TTTCGTAAATTGTTAGATATGCTGTAAAAAATTTCTTGTCGTTGGAAAATTGGCGCAAATACGTTTTATAGAACTCGACT ACTCGCCTCCTAGAGCTTAT
Product: acetamidase/formamidase
Products: formate; NH3
Alternate protein names: Acetamidase/Formamidase Family Protein
Number of amino acids: Translated: 439; Mature: 438
Protein sequence:
>439_residues MSEKVSQKKPLDRLVVTSYTNGIIGPSQTMLGPLADGGTLVTGTPPGCWGPMITPAFQGGHEVTKPVAIVGAEIGDAVAL KITRISVTSIATSSGVMKFVEGRYHDDPFVSKFCSECGIERPASHVEGIGEDAIRCNNCGAEVNAFRFSNGYVIVLDHEN QISLTVNQEVANRLAGKASEMSALPELAQQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAN HQYGMTREELHGAKTDGHMDTNSVREGCILICPVKVPGAGVYMGDMHAQQGNGEIAGHATDVSGETELTVEVIKGLTIEG PILLQNIDDLPPMARPMDCVQRQKARELGLKWGQLELEDNGPITFLGSGENLNAATENGLNRAASVTGLSYDEVRNRATI TGSIEISRLPGTVRVTFLCPLSILDRMGIGHLVRQKYQL
Sequences:
>Translated_439_residues MSEKVSQKKPLDRLVVTSYTNGIIGPSQTMLGPLADGGTLVTGTPPGCWGPMITPAFQGGHEVTKPVAIVGAEIGDAVAL KITRISVTSIATSSGVMKFVEGRYHDDPFVSKFCSECGIERPASHVEGIGEDAIRCNNCGAEVNAFRFSNGYVIVLDHEN QISLTVNQEVANRLAGKASEMSALPELAQQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAN HQYGMTREELHGAKTDGHMDTNSVREGCILICPVKVPGAGVYMGDMHAQQGNGEIAGHATDVSGETELTVEVIKGLTIEG PILLQNIDDLPPMARPMDCVQRQKARELGLKWGQLELEDNGPITFLGSGENLNAATENGLNRAASVTGLSYDEVRNRATI TGSIEISRLPGTVRVTFLCPLSILDRMGIGHLVRQKYQL >Mature_438_residues SEKVSQKKPLDRLVVTSYTNGIIGPSQTMLGPLADGGTLVTGTPPGCWGPMITPAFQGGHEVTKPVAIVGAEIGDAVALK ITRISVTSIATSSGVMKFVEGRYHDDPFVSKFCSECGIERPASHVEGIGEDAIRCNNCGAEVNAFRFSNGYVIVLDHENQ ISLTVNQEVANRLAGKASEMSALPELAQQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGANH QYGMTREELHGAKTDGHMDTNSVREGCILICPVKVPGAGVYMGDMHAQQGNGEIAGHATDVSGETELTVEVIKGLTIEGP ILLQNIDDLPPMARPMDCVQRQKARELGLKWGQLELEDNGPITFLGSGENLNAATENGLNRAASVTGLSYDEVRNRATIT GSIEISRLPGTVRVTFLCPLSILDRMGIGHLVRQKYQL
Specific function: Unknown
COG id: COG2421
COG function: function code C; Predicted acetamidase/formamidase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: 3.5.1.49
Molecular weight: Translated: 46908; Mature: 46777
Theoretical pI: Translated: 5.57; Mature: 5.57
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.3 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 5.5 %Cys+Met (Translated Protein) 2.3 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 5.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSEKVSQKKPLDRLVVTSYTNGIIGPSQTMLGPLADGGTLVTGTPPGCWGPMITPAFQGG CCCCCCCCCCHHHEEEECCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC HEVTKPVAIVGAEIGDAVALKITRISVTSIATSSGVMKFVEGRYHDDPFVSKFCSECGIE CHHCCCEEEEECCCCCEEEEEEEEEEEEHHHCHHHHHHHHCCCCCCCHHHHHHHHHCCCC RPASHVEGIGEDAIRCNNCGAEVNAFRFSNGYVIVLDHENQISLTVNQEVANRLAGKASE CCHHHHCCCCCCCEEECCCCCCEEEEEECCCEEEEEECCCEEEEEECHHHHHHHHCCHHH MSALPELAQQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAN HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC HQYGMTREELHGAKTDGHMDTNSVREGCILICPVKVPGAGVYMGDMHAQQGNGEIAGHAT CCCCCCHHHHCCCCCCCCCCHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEEEE DVSGETELTVEVIKGLTIEGPILLQNIDDLPPMARPMDCVQRQKARELGLKWGQLELEDN CCCCCCEEEHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC GPITFLGSGENLNAATENGLNRAASVTGLSYDEVRNRATITGSIEISRLPGTVRVTFLCP CCEEEEECCCCCCHHHHHCCHHHHHCCCCCHHHHCCCEEEEEEEEEEECCCEEEEEEEEC LSILDRMGIGHLVRQKYQL HHHHHHCCHHHHHHHHHCC >Mature Secondary Structure SEKVSQKKPLDRLVVTSYTNGIIGPSQTMLGPLADGGTLVTGTPPGCWGPMITPAFQGG CCCCCCCCCHHHEEEECCCCCCCCCCHHHHCCCCCCCEEEECCCCCCCCCCCCCCCCCC HEVTKPVAIVGAEIGDAVALKITRISVTSIATSSGVMKFVEGRYHDDPFVSKFCSECGIE CHHCCCEEEEECCCCCEEEEEEEEEEEEHHHCHHHHHHHHCCCCCCCHHHHHHHHHCCCC RPASHVEGIGEDAIRCNNCGAEVNAFRFSNGYVIVLDHENQISLTVNQEVANRLAGKASE CCHHHHCCCCCCCEEECCCCCCEEEEEECCCEEEEEECCCEEEEEECHHHHHHHHCCHHH MSALPELAQQHSILSLARADMPGVAAHMRPFLGNIGTTPSRDLPDSHNCADFGQYLIGAN HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCC HQYGMTREELHGAKTDGHMDTNSVREGCILICPVKVPGAGVYMGDMHAQQGNGEIAGHAT CCCCCCHHHHCCCCCCCCCCHHHHHCCEEEEEEECCCCCCEEECCCCCCCCCCEEEEEEE DVSGETELTVEVIKGLTIEGPILLQNIDDLPPMARPMDCVQRQKARELGLKWGQLELEDN CCCCCCEEEHHHHHCCCCCCCEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCC GPITFLGSGENLNAATENGLNRAASVTGLSYDEVRNRATITGSIEISRLPGTVRVTFLCP CCEEEEECCCCCCHHHHHCCHHHHHCCCCCHHHHCCCEEEEEEEEEEECCCEEEEEEEEC LSILDRMGIGHLVRQKYQL HHHHHHCCHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: formamide; H2O
Specific reaction: formamide + H2O = formate + NH3
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA