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The map label for this gene is ltrA [H]

Identifier: 77461911

GI number: 77461911

Start: 6377966

End: 6378892

Strand: Reverse

Name: ltrA [H]

Synonym: Pfl01_5691

Alternate gene names: 77461911

Gene position: 6378892-6377966 (Counterclockwise)

Preceding gene: 77461913

Following gene: 77461910

Centisome position: 99.08

GC content: 63.11

Gene sequence:

>927_bases
ATGGATCGCTTCCAGGAAATGCAGGTTTTCGCCATCGTCGCCCAGGAGCAGGGCTTCTCCGCTGCCGCGCGGCGCCTGGG
TTTGTCGGCAGCCAGCGTAACCCGGGCGGTGGCGGGGCTGGAGCAGCGGATCGGTACGCAGTTGTTGATCCGCACCACTC
GTAGTGTGCATTTGAGCGAAGCGGGCCTGCGTTATCTGGAAGACTGTCGGAGAATTCTCGCCGAGGTGCAGGAAGCGGAG
GATTCCGCTGCCGGCAGTCATACCCAGCCCCGCGGGCAGTTGACGGTGACGGCGCCTGTTTTATTCGGTGAACTGTTTGT
CACGCCGGTGATGGCGCGTTATCTGACGCAATACCCGGACGTTTCCATCAATGCCCTGTTGCTCGACCGGGTGGTGAGCA
TGGTCGAGGAGGGCGTCGACGTCGCGGTGCGAATCGGCGAGTTGCCGGACAGCAATCAGCATGCGATCCGGGTCGGTGAG
GTGCGGCGGGTGATCTGCGGCTCGCCGGAATACTTCGCGGTCCATGGTCGGCCTGCCCATCCGCAGGCCTTGGCCGGGGC
GCCGGTGGTGGCGACGTCGGCCATCGGCCAGCAGCGCAGTTGGCCGTTCATGGAGCACGGTGAACTGATTGGGGTAAAAC
CGGAGCCGCGTCTGGTGGTCACCGCCAATCAGGCTGCAATCACGGCGGCGTCGCTAGGCCTGGGGCTGACCCGGGTACTG
TCTTATCAGGTGGCCAGCAAGGTCGCCTCCGGCGAACTGGAAATCGTCCTCGCCGAGTTCGAACTGCCTGCGCTGCCGAT
CCACGTGGTGTATCAGGGCGGGCGCAAGGCGCCGGCTCGGGTGCGCAGTTTTGTCGACTTCATGGTGAACGCATTGCGTG
AGCATCCCGCCTTGAAAAATGCCGCTTTATTTCATCCAGAGAAATAA

Upstream 100 bases:

>100_bases
GCCCAGCGTTTTGGGGGATTTCAGGACAAACTATGTTGTCGGAATACACCCATAAAATCGCAGCTTCGGCTGCGATTTTT
TTATCCGGATCGAGGGCACC

Downstream 100 bases:

>100_bases
TGGATTGCATTTGCTGGTGATTCTGTTGTTTTCACGATAGGTGGAAGATGGCTCCCACGGCCGCCGTCCACCCTGAACGG
CGCCATCATCCAGCGGAGTC

Product: LysR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MDRFQEMQVFAIVAQEQGFSAAARRLGLSAASVTRAVAGLEQRIGTQLLIRTTRSVHLSEAGLRYLEDCRRILAEVQEAE
DSAAGSHTQPRGQLTVTAPVLFGELFVTPVMARYLTQYPDVSINALLLDRVVSMVEEGVDVAVRIGELPDSNQHAIRVGE
VRRVICGSPEYFAVHGRPAHPQALAGAPVVATSAIGQQRSWPFMEHGELIGVKPEPRLVVTANQAAITAASLGLGLTRVL
SYQVASKVASGELEIVLAEFELPALPIHVVYQGGRKAPARVRSFVDFMVNALREHPALKNAALFHPEK

Sequences:

>Translated_308_residues
MDRFQEMQVFAIVAQEQGFSAAARRLGLSAASVTRAVAGLEQRIGTQLLIRTTRSVHLSEAGLRYLEDCRRILAEVQEAE
DSAAGSHTQPRGQLTVTAPVLFGELFVTPVMARYLTQYPDVSINALLLDRVVSMVEEGVDVAVRIGELPDSNQHAIRVGE
VRRVICGSPEYFAVHGRPAHPQALAGAPVVATSAIGQQRSWPFMEHGELIGVKPEPRLVVTANQAAITAASLGLGLTRVL
SYQVASKVASGELEIVLAEFELPALPIHVVYQGGRKAPARVRSFVDFMVNALREHPALKNAALFHPEK
>Mature_308_residues
MDRFQEMQVFAIVAQEQGFSAAARRLGLSAASVTRAVAGLEQRIGTQLLIRTTRSVHLSEAGLRYLEDCRRILAEVQEAE
DSAAGSHTQPRGQLTVTAPVLFGELFVTPVMARYLTQYPDVSINALLLDRVVSMVEEGVDVAVRIGELPDSNQHAIRVGE
VRRVICGSPEYFAVHGRPAHPQALAGAPVVATSAIGQQRSWPFMEHGELIGVKPEPRLVVTANQAAITAASLGLGLTRVL
SYQVASKVASGELEIVLAEFELPALPIHVVYQGGRKAPARVRSFVDFMVNALREHPALKNAALFHPEK

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1789639, Length=293, Percent_Identity=29.0102389078498, Blast_Score=140, Evalue=8e-35,
Organism=Escherichia coli, GI1786401, Length=296, Percent_Identity=30.4054054054054, Blast_Score=139, Evalue=2e-34,
Organism=Escherichia coli, GI1787128, Length=285, Percent_Identity=27.719298245614, Blast_Score=131, Evalue=4e-32,
Organism=Escherichia coli, GI87081978, Length=304, Percent_Identity=31.9078947368421, Blast_Score=131, Evalue=5e-32,
Organism=Escherichia coli, GI145693193, Length=300, Percent_Identity=29, Blast_Score=124, Evalue=5e-30,
Organism=Escherichia coli, GI1787589, Length=285, Percent_Identity=29.1228070175439, Blast_Score=109, Evalue=3e-25,
Organism=Escherichia coli, GI1789440, Length=286, Percent_Identity=27.6223776223776, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1787879, Length=165, Percent_Identity=32.7272727272727, Blast_Score=77, Evalue=1e-15,
Organism=Escherichia coli, GI1788706, Length=176, Percent_Identity=26.7045454545455, Blast_Score=70, Evalue=1e-13,
Organism=Escherichia coli, GI2367136, Length=285, Percent_Identity=25.2631578947368, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI1789173, Length=140, Percent_Identity=27.8571428571429, Blast_Score=63, Evalue=2e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 33366; Mature: 33366

Theoretical pI: Translated: 7.33; Mature: 7.33

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDRFQEMQVFAIVAQEQGFSAAARRLGLSAASVTRAVAGLEQRIGTQLLIRTTRSVHLSE
CCHHHHEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHEEHHHHHHHHHH
AGLRYLEDCRRILAEVQEAEDSAAGSHTQPRGQLTVTAPVLFGELFVTPVMARYLTQYPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
VSINALLLDRVVSMVEEGVDVAVRIGELPDSNQHAIRVGEVRRVICGSPEYFAVHGRPAH
CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEHHHHHHHHCCCCCEEEECCCCCC
PQALAGAPVVATSAIGQQRSWPFMEHGELIGVKPEPRLVVTANQAAITAASLGLGLTRVL
CHHHCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH
SYQVASKVASGELEIVLAEFELPALPIHVVYQGGRKAPARVRSFVDFMVNALREHPALKN
HHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
AALFHPEK
CCCCCCCC
>Mature Secondary Structure
MDRFQEMQVFAIVAQEQGFSAAARRLGLSAASVTRAVAGLEQRIGTQLLIRTTRSVHLSE
CCHHHHEEEEEEEECCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCHHHEEHHHHHHHHHH
AGLRYLEDCRRILAEVQEAEDSAAGSHTQPRGQLTVTAPVLFGELFVTPVMARYLTQYPD
HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHHHCCC
VSINALLLDRVVSMVEEGVDVAVRIGELPDSNQHAIRVGEVRRVICGSPEYFAVHGRPAH
CCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEHHHHHHHHCCCCCEEEECCCCCC
PQALAGAPVVATSAIGQQRSWPFMEHGELIGVKPEPRLVVTANQAAITAASLGLGLTRVL
CHHHCCCCHHHHHHHCCCCCCCCCCCCCEEECCCCCCEEEEECCHHHHHHHHHHHHHHHH
SYQVASKVASGELEIVLAEFELPALPIHVVYQGGRKAPARVRSFVDFMVNALREHPALKN
HHHHHHHHCCCCEEEEEEECCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCC
AALFHPEK
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8748036 [H]