| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77461894
Identifier: 77461894
GI number: 77461894
Start: 6356696
End: 6358834
Strand: Reverse
Name: 77461894
Synonym: Pfl01_5674
Alternate gene names: NA
Gene position: 6358834-6356696 (Counterclockwise)
Preceding gene: 77461895
Following gene: 77461892
Centisome position: 98.76
GC content: 63.77
Gene sequence:
>2139_bases ATGTTGACCCGTAACTGGCCCCGCCATCTGCTTTGCCTGAGCCTCAGCCTGCCGCTGGGCTCGGCGCTGGCCTGTGGCCC GGACTTCCCGATGCGCCTGCTCGACGATCGCGGGCAATCGCTGGCGGAGCTGCCGGAGGGCAACTTCAGGTTCGAGATCA GTCGCCTCGGCAAAACCATTGCCGGGCTGAAGAACGTTACCGCCGCCACCCACAATCCGGATGACATCTACGCCGAGGCG CCAGATCCCGCCGAGGTGCGCGACAAGGCCGAGCAGATCGGCCTGACCCCTGAACAGCAAGCGCTGGTCAAGCAACTGCG CAGCCTGACCGATGCGCATCAGGTTGACGTGCAGGGCGCGAGCCTGCCGGCGGAACTGCGTCTGTATGTGGCGGGCGCGG TGGCGTTCGGCGCCGGTGACCATCAACTGGCGGTCGAGTATTTCCGTCAGTTGCTGGCGCTGCCGGCCGATCAGCGGGCG TTGCGCAGCACCTGGGCTGCCTATTCTCTGGGCCGAGCGTACTTTGCCATGAGCAGCGAAGCGGGCGACGCGCTCGAAGC CTGGGAAAACGCTATCGACGCGTTCCGCCAGGCGCGGCAACTGAGCATCGACGGCTTCAGCGATCCGCAGGAGCTGGGCG TGGCCAGCCTCGGTGAAGAGGCGCGGGCGCTGCGCATGGCGGGTGACTGGAACAACGCCATCAAGCTGTATGCCGCGCAA AACCTGCACGGCTCGAACGTCGGTTACACCTCGCTGAAGCAGTTGATGAACGAACTGGCCGAGGAGCCCGAAGATCGGCT GGCGAAATTGCTGCGCCGCGAAGCGGTGCAGCAACTGGTGACCGCCTCGCTGATTAGCCGCATTGGCTGGTCGTTCGGCG ATGAACCGCCGAACGAGAAGAAGCTGGTCAAAGCGCTGCAAGCGAGTACCCGAGGCAGCCTCGACAACGCTGATCGCCTG GCGGCGATGAATTATCAGCAAGGCGATTACGCCAGCGCCAAGGCGTTCCTTGAACACGCTGGCGACAGCGGTCTGGCGTG GTGGCTGCGGGCAAAACTGGCGGTGCGCGATGGCGACAGGAACGCAGCGGCTGCGGCCTACGCGAAGGCCGCGCAAGCGT TCCCGCAGGACGAATCCTGGGGCGAGCGGCGCACCGCCGACTGGAATCTCGAAACCGTGCAGCCCAAATGCCGGGTCGAA GGTGAAAGCGCAATTCTTGCGCTGCAACGTGGCGAGTACCTGAAGGCTTTCGACCAGTTGTATCGCAGCCAGCATATTTA CTGGTTCGACGCCGCGACCGTGGCCGAGCGAGTGCTGACGGTCGATGAGCTGAAAAACTATGTCGATACCAACGTCCCGG CACCGCCCGCGCTGAGCCAGCAGGATCGCGACAATTACGTGCCACTGCCAGTGGCCGCCAGCCTGCGCAATCTGCTGGGT CGGCGCCTGTTGCGTGAGGGGCATTACGAAGAAGCGGTCGGTTATTTCGACAATGCTGATCTGCAGAACAAGGCCCGGCT CTATGGCCAGCAACGCCTCAAGGCCGACTCGGCTTGGTGGCCGACCAAGCGTGCCAGCGCGCTGTTCAATGCCGCGTGGA CGGCCCGTGAGTGGGGCATGGACATCCTGGGCTACGAAATGGCCCCGGATTACGCGACCTTCGGCGGCAACTACAGCCTG GAAAAGACCGAGCTGAAAGTCGGCCCGCTGGTCAGCGAAGCCGAAGTGCAGCGTCAGAAGACCAGTGAAGCGCAGCCGGA TGAGCGTTATCACTATCGTTTTGTCGCCACGGCGCTGGCCAGCCGTGCGGCAGACAATCTGCCGCACACCAGCCAGGCGT TCGCCGCTGTGTTGTGCTCGGCGGCGGGCTGGAACAGCAGCCTGGAAGAGCAGAGCGCCTTGTACAAACGCTATGTCGAC GAAGGGCCGTACGTGCCGTGGGCCGTAGATTTCGGCCATCAGTGTCCTTATCCGGACTTCGAAAGTGCCGACAAGCGCTA CGTCACTCAGGTGACCGACTCGGTGCGTTCGACACTGCGGCCGTACAAGTGGCCGGTTCAGATCGGAGCGATCGTAGCCC TCACCGCTGTGGCGTTGTTGCTGATCACCCGCCGCCAGCGCAAGGCCCGCAAAGCCTAA
Upstream 100 bases:
>100_bases CTGCTTACCTTCACCCGCCTGCGCGACGGCCGCCTGCCGGCGGGCGGGCAGCGGGCGATCGGTTGGGCACGCTGCGCAAA TATTGATCAAGGAGGTTCGC
Downstream 100 bases:
>100_bases GCCTGCTGGACGAAGGTCAGGCGCACGGCGAAGCCGATCAACAGGCTGCCGAACAGCCACTGTTGCACCCGTTGGGCCGT CGGGCTGTGTTTCAGCCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: Tetratricopeptide Repeat Family; Tetratricopeptide Domain-Containing Protein
Number of amino acids: Translated: 712; Mature: 712
Protein sequence:
>712_residues MLTRNWPRHLLCLSLSLPLGSALACGPDFPMRLLDDRGQSLAELPEGNFRFEISRLGKTIAGLKNVTAATHNPDDIYAEA PDPAEVRDKAEQIGLTPEQQALVKQLRSLTDAHQVDVQGASLPAELRLYVAGAVAFGAGDHQLAVEYFRQLLALPADQRA LRSTWAAYSLGRAYFAMSSEAGDALEAWENAIDAFRQARQLSIDGFSDPQELGVASLGEEARALRMAGDWNNAIKLYAAQ NLHGSNVGYTSLKQLMNELAEEPEDRLAKLLRREAVQQLVTASLISRIGWSFGDEPPNEKKLVKALQASTRGSLDNADRL AAMNYQQGDYASAKAFLEHAGDSGLAWWLRAKLAVRDGDRNAAAAAYAKAAQAFPQDESWGERRTADWNLETVQPKCRVE GESAILALQRGEYLKAFDQLYRSQHIYWFDAATVAERVLTVDELKNYVDTNVPAPPALSQQDRDNYVPLPVAASLRNLLG RRLLREGHYEEAVGYFDNADLQNKARLYGQQRLKADSAWWPTKRASALFNAAWTAREWGMDILGYEMAPDYATFGGNYSL EKTELKVGPLVSEAEVQRQKTSEAQPDERYHYRFVATALASRAADNLPHTSQAFAAVLCSAAGWNSSLEEQSALYKRYVD EGPYVPWAVDFGHQCPYPDFESADKRYVTQVTDSVRSTLRPYKWPVQIGAIVALTAVALLLITRRQRKARKA
Sequences:
>Translated_712_residues MLTRNWPRHLLCLSLSLPLGSALACGPDFPMRLLDDRGQSLAELPEGNFRFEISRLGKTIAGLKNVTAATHNPDDIYAEA PDPAEVRDKAEQIGLTPEQQALVKQLRSLTDAHQVDVQGASLPAELRLYVAGAVAFGAGDHQLAVEYFRQLLALPADQRA LRSTWAAYSLGRAYFAMSSEAGDALEAWENAIDAFRQARQLSIDGFSDPQELGVASLGEEARALRMAGDWNNAIKLYAAQ NLHGSNVGYTSLKQLMNELAEEPEDRLAKLLRREAVQQLVTASLISRIGWSFGDEPPNEKKLVKALQASTRGSLDNADRL AAMNYQQGDYASAKAFLEHAGDSGLAWWLRAKLAVRDGDRNAAAAAYAKAAQAFPQDESWGERRTADWNLETVQPKCRVE GESAILALQRGEYLKAFDQLYRSQHIYWFDAATVAERVLTVDELKNYVDTNVPAPPALSQQDRDNYVPLPVAASLRNLLG RRLLREGHYEEAVGYFDNADLQNKARLYGQQRLKADSAWWPTKRASALFNAAWTAREWGMDILGYEMAPDYATFGGNYSL EKTELKVGPLVSEAEVQRQKTSEAQPDERYHYRFVATALASRAADNLPHTSQAFAAVLCSAAGWNSSLEEQSALYKRYVD EGPYVPWAVDFGHQCPYPDFESADKRYVTQVTDSVRSTLRPYKWPVQIGAIVALTAVALLLITRRQRKARKA >Mature_712_residues MLTRNWPRHLLCLSLSLPLGSALACGPDFPMRLLDDRGQSLAELPEGNFRFEISRLGKTIAGLKNVTAATHNPDDIYAEA PDPAEVRDKAEQIGLTPEQQALVKQLRSLTDAHQVDVQGASLPAELRLYVAGAVAFGAGDHQLAVEYFRQLLALPADQRA LRSTWAAYSLGRAYFAMSSEAGDALEAWENAIDAFRQARQLSIDGFSDPQELGVASLGEEARALRMAGDWNNAIKLYAAQ NLHGSNVGYTSLKQLMNELAEEPEDRLAKLLRREAVQQLVTASLISRIGWSFGDEPPNEKKLVKALQASTRGSLDNADRL AAMNYQQGDYASAKAFLEHAGDSGLAWWLRAKLAVRDGDRNAAAAAYAKAAQAFPQDESWGERRTADWNLETVQPKCRVE GESAILALQRGEYLKAFDQLYRSQHIYWFDAATVAERVLTVDELKNYVDTNVPAPPALSQQDRDNYVPLPVAASLRNLLG RRLLREGHYEEAVGYFDNADLQNKARLYGQQRLKADSAWWPTKRASALFNAAWTAREWGMDILGYEMAPDYATFGGNYSL EKTELKVGPLVSEAEVQRQKTSEAQPDERYHYRFVATALASRAADNLPHTSQAFAAVLCSAAGWNSSLEEQSALYKRYVD EGPYVPWAVDFGHQCPYPDFESADKRYVTQVTDSVRSTLRPYKWPVQIGAIVALTAVALLLITRRQRKARKA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 79061; Mature: 79061
Theoretical pI: Translated: 5.89; Mature: 5.89
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.8 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MLTRNWPRHLLCLSLSLPLGSALACGPDFPMRLLDDRGQSLAELPEGNFRFEISRLGKTI CCCCCCCHHEEEEEECCCCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCEEEHHHHHHHH AGLKNVTAATHNPDDIYAEAPDPAEVRDKAEQIGLTPEQQALVKQLRSLTDAHQVDVQGA HHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC SLPAELRLYVAGAVAFGAGDHQLAVEYFRQLLALPADQRALRSTWAAYSLGRAYFAMSSE CCCHHHEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCC AGDALEAWENAIDAFRQARQLSIDGFSDPQELGVASLGEEARALRMAGDWNNAIKLYAAQ CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHCHHHHHHHHCCCCCCEEEEEEEC NLHGSNVGYTSLKQLMNELAEEPEDRLAKLLRREAVQQLVTASLISRIGWSFGDEPPNEK CCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH KLVKALQASTRGSLDNADRLAAMNYQQGDYASAKAFLEHAGDSGLAWWLRAKLAVRDGDR HHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEECCCC NAAAAAYAKAAQAFPQDESWGERRTADWNLETVQPKCRVEGESAILALQRGEYLKAFDQL CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCEEEEECCCHHHHHHHHH YRSQHIYWFDAATVAERVLTVDELKNYVDTNVPAPPALSQQDRDNYVPLPVAASLRNLLG HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH RRLLREGHYEEAVGYFDNADLQNKARLYGQQRLKADSAWWPTKRASALFNAAWTAREWGM HHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC DILGYEMAPDYATFGGNYSLEKTELKVGPLVSEAEVQRQKTSEAQPDERYHYRFVATALA HHHCCCCCCCCCCCCCCCCEEHHHEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SRAADNLPHTSQAFAAVLCSAAGWNSSLEEQSALYKRYVDEGPYVPWAVDFGHQCPYPDF HHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC ESADKRYVTQVTDSVRSTLRPYKWPVQIGAIVALTAVALLLITRRQRKARKA CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MLTRNWPRHLLCLSLSLPLGSALACGPDFPMRLLDDRGQSLAELPEGNFRFEISRLGKTI CCCCCCCHHEEEEEECCCCCCCCCCCCCCCHHHHHHCCCHHHHCCCCCCEEEHHHHHHHH AGLKNVTAATHNPDDIYAEAPDPAEVRDKAEQIGLTPEQQALVKQLRSLTDAHQVDVQGA HHHHHHHCCCCCCCCCEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCC SLPAELRLYVAGAVAFGAGDHQLAVEYFRQLLALPADQRALRSTWAAYSLGRAYFAMSSE CCCHHHEEEEEHHHHCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHEEECCC AGDALEAWENAIDAFRQARQLSIDGFSDPQELGVASLGEEARALRMAGDWNNAIKLYAAQ CCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCHHHHCHHHHHHHHCCCCCCEEEEEEEC NLHGSNVGYTSLKQLMNELAEEPEDRLAKLLRREAVQQLVTASLISRIGWSFGDEPPNEK CCCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHH KLVKALQASTRGSLDNADRLAAMNYQQGDYASAKAFLEHAGDSGLAWWLRAKLAVRDGDR HHHHHHHHHHCCCCCCCHHHHHCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHEECCCC NAAAAAYAKAAQAFPQDESWGERRTADWNLETVQPKCRVEGESAILALQRGEYLKAFDQL CHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHEECCCCEEEEECCCHHHHHHHHH YRSQHIYWFDAATVAERVLTVDELKNYVDTNVPAPPALSQQDRDNYVPLPVAASLRNLLG HHCCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH RRLLREGHYEEAVGYFDNADLQNKARLYGQQRLKADSAWWPTKRASALFNAAWTAREWGM HHHHHCCCHHHHHCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCC DILGYEMAPDYATFGGNYSLEKTELKVGPLVSEAEVQRQKTSEAQPDERYHYRFVATALA HHHCCCCCCCCCCCCCCCCEEHHHEECCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH SRAADNLPHTSQAFAAVLCSAAGWNSSLEEQSALYKRYVDEGPYVPWAVDFGHQCPYPDF HHHHCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCC ESADKRYVTQVTDSVRSTLRPYKWPVQIGAIVALTAVALLLITRRQRKARKA CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA