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The map label for this gene is ybaO [H]

Identifier: 77461892

GI number: 77461892

Start: 6355453

End: 6355926

Strand: Reverse

Name: ybaO [H]

Synonym: Pfl01_5672

Alternate gene names: 77461892

Gene position: 6355926-6355453 (Counterclockwise)

Preceding gene: 77461894

Following gene: 77461890

Centisome position: 98.72

GC content: 62.66

Gene sequence:

>474_bases
ATGAAACTCGATGCCTTCGACCGCAAGATTCTCGCCGCGCTGCAACGGGACGGGCGCCTGAGCAACGTGCAGTTGGCCGA
CGAAATCGGTCTGTCGGCATCGCCGTGCCTGCGCCGGGTGCGAATGCTGGAGGAGGCCGGGGTGATTCGCGGTTATCAGG
CCAACCTGGATCGTGATGAAGTGGGGTTGGGGCTGACGGTGTTTGTCGGGGTCAAGGTCGAGCGGCACAACGACGAACAG
GCCGAGGCGTTTCATCGGGCGGTGACGGCGTTGCCGGAGGTGATTTCGGCGTTTCTGGTGTCCGGGGAATCGGACTTTCT
GCTGCAAGTGGTGGTGCCGGATCTGCGCGCCTATGACCGCTTTCTCACCGGTTGCCTGTTGAAGCTGCCGGGAGTGAGCG
ATATCCGCAGCAATTTTGCGATCCACACGGTGAAGACACCCGGCGCGTTGCCGCTGGGGCATCTGCCGTCCTGA

Upstream 100 bases:

>100_bases
CGAAAGGCAGGGCAGGTGGTTGCGTAGTCAGCTTCTAAAGGCCTCTGAATTGGCATAATCTGCGCTCTTTCACCGCGTAA
ACCATCAGGATCTGCCAACC

Downstream 100 bases:

>100_bases
TACTTCCCGCATTGCGCGGGAAGTATTCGCACAGTGCTTACATCTGCGTCGCCATCCCCTCGACATTCATCGCTGCCTGA
CGCAACGCTTCGGAGCGGGT

Product: AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 157; Mature: 157

Protein sequence:

>157_residues
MKLDAFDRKILAALQRDGRLSNVQLADEIGLSASPCLRRVRMLEEAGVIRGYQANLDRDEVGLGLTVFVGVKVERHNDEQ
AEAFHRAVTALPEVISAFLVSGESDFLLQVVVPDLRAYDRFLTGCLLKLPGVSDIRSNFAIHTVKTPGALPLGHLPS

Sequences:

>Translated_157_residues
MKLDAFDRKILAALQRDGRLSNVQLADEIGLSASPCLRRVRMLEEAGVIRGYQANLDRDEVGLGLTVFVGVKVERHNDEQ
AEAFHRAVTALPEVISAFLVSGESDFLLQVVVPDLRAYDRFLTGCLLKLPGVSDIRSNFAIHTVKTPGALPLGHLPS
>Mature_157_residues
MKLDAFDRKILAALQRDGRLSNVQLADEIGLSASPCLRRVRMLEEAGVIRGYQANLDRDEVGLGLTVFVGVKVERHNDEQ
AEAFHRAVTALPEVISAFLVSGESDFLLQVVVPDLRAYDRFLTGCLLKLPGVSDIRSNFAIHTVKTPGALPLGHLPS

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87081742, Length=150, Percent_Identity=40.6666666666667, Blast_Score=127, Evalue=2e-31,
Organism=Escherichia coli, GI1787116, Length=148, Percent_Identity=45.2702702702703, Blast_Score=125, Evalue=1e-30,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR013196
- InterPro:   IPR000485
- InterPro:   IPR019885
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08279 HTH_11 [H]

EC number: NA

Molecular weight: Translated: 17176; Mature: 17176

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: PS00519 HTH_ASNC_1 ; PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLDAFDRKILAALQRDGRLSNVQLADEIGLSASPCLRRVRMLEEAGVIRGYQANLDRDE
CCCCHHHHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
VGLGLTVFVGVKVERHNDEQAEAFHRAVTALPEVISAFLVSGESDFLLQVVVPDLRAYDR
HCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH
FLTGCLLKLPGVSDIRSNFAIHTVKTPGALPLGHLPS
HHHHHHHHCCCHHHHHCCEEEEEECCCCCCCCCCCCC
>Mature Secondary Structure
MKLDAFDRKILAALQRDGRLSNVQLADEIGLSASPCLRRVRMLEEAGVIRGYQANLDRDE
CCCCHHHHHHHHHHHHCCCCCCEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCHHH
VGLGLTVFVGVKVERHNDEQAEAFHRAVTALPEVISAFLVSGESDFLLQVVVPDLRAYDR
HCCCEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHHHH
FLTGCLLKLPGVSDIRSNFAIHTVKTPGALPLGHLPS
HHHHHHHHCCCHHHHHCCEEEEEECCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]