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The map label for this gene is clpV1 [H]

Identifier: 77461805

GI number: 77461805

Start: 6255602

End: 6258259

Strand: Reverse

Name: clpV1 [H]

Synonym: Pfl01_5584

Alternate gene names: 77461805

Gene position: 6258259-6255602 (Counterclockwise)

Preceding gene: 77461806

Following gene: 77461804

Centisome position: 97.2

GC content: 64.97

Gene sequence:

>2658_bases
ATGATCAACGTAGACCTGCAACAACTCATCCAGGCGCTGGACGCCGAAACCCGTCGCGATCTGGAGCGTTCGGCCGAGCG
CTGCGTGGCCCGTGGCGGCAGCAAGATTCTGGTCGAAGACTTGCTGCTCGGCCTGCTGGAGCGCCCGAACGGTTTGCTCT
CGCGGGCACTGCAGGATGCCGACGTTGATGCCGGCGAACTGAGCGCCGCCCTGCAATCGCGGGTCGAGCACAGCGCTTCG
CGCAACCCGGTGTTCGCTCCGGAACTGGTGCAGTGGCTGCAAGACGCGCTGCTGGTGGCCAACCTTGAACTGGGCCAGAC
CTCGGTCGAAGACGCGGCGCTTATCCTCGCGCTGCTGCGCAACCCGATGCGCTACGCCGGCAGCCGCTACCAGCCGTTGC
TGGCCAAACTGAACATCGATCGCCTGAAGGAATTTGCGCTGTCGCAACAGCCTCAGGCAGCGGCCAACGGTAAGCCGGCC
GCCCAGGGCGAATCGCTGCTGGAGCGCTTCACCCATAACCTGACCCAACAGGCCCGCGACGGCAAACTCGACCCGGTGCT
GTGCCGCGATGGCGCGATCCGCCAGATGGTCGACATCCTCGCCCGTCGCCGCAAGAACAATCCGATCGTGGTCGGTGAAG
CCGGTGTCGGTAAAACCGCCATCGTCGAAGGCCTGGCCTCGCGCATCGCTGCCGGTGAAGTGCCGCAGGTGCTCAAGGGC
GTCGAGCTGCTGTCGCTGGACATGGGCCTGTTGCAGGCCGGCGCCAGCGTCAAAGGTGAATTCGAACGTCGTCTGAAAGG
CGTGATCGACGAGGTCAAAGCCTCGCCGAAGCCGATCATCCTGTTCATCGACGAGGCCCACACCCTGATCGGCGCGGGCG
GTAATGCCGGCGGTTCCGATGCGGCCAACCTGCTGAAGCCGGCACTGGCGCGCGGCGAACTGCGCACCATCGCCGCGACC
ACCTGGGCCGAGTACAAGAAATACTTCGAAAAAGACCCGGCGCTGGCCCGTCGTTTCCAGCCGGTTCAACTGCACGAACC
GACCGTGAGCGAAGCCGTCACCATCCTGCGTGGCCTGGCTCAGGTCTACGAAAAGAGCCACGGCATCTACCTGCGTGACG
ACGCGGTGGTTTCCGCAGCCGAGCTGTCTGCTCGTTACCTGGCCGGTCGGCAACTGCCGGACAAGGCCGTCGATGTGCTC
GACACCGCGTGCGCCCGCGTTCGCATCAGCCTCGCTGCTGCCCCGGAAAGCCTGGAACGCCTGCGTGGCGAACTGGCTGA
AGGCGGTCGTCAGCGTCAGGCCCTGCGCCGCGATGCCGAAGCCGGTCTGCTGATCGACCACGAAGCGCTGGAGGCACTGG
AAGCGCGCCTGGACGAAGCCGAAGCCGAAATGGTCGCACTGGAAACCCAGTGGACCGAGCAGAAACAACTGGCCGAGCGC
CTGCTGGAACTGCGCCAGCAACTGGCCAAGGCCCGTGAAGCCGCTGCGGTCGAGCCGGTGGTGACCGTTGAAGAAGACGC
CGAAGGCACCGTGATCGAAACCCACGCCGCCGAAGTTGACGAAGCTCTTAGCGTCGAAGCGCTGGAAGCACAACTCAACG
AAACCCACAGCGCCCTGACCGCCGCTCAGGTCAAGGAGCGTCTGGTCAGCTTCGAAGTCTGCCCGCGTCTGGTGGCCGAA
GTGATCAGCGCCTGGACCGGCGTGCCGCTGGCGCAACTGGCCCGCGAGCACAACGCCAAGGTCGCCAGCTTCGCCACCGA
CCTGCGCACCCGCATCCGGGGTCAGGAACAAGCCGTGCACGCCCTGGATCGCTCGATGCGCGCCACCGCAGCCGGCCTGA
ACAAGCCTGACGCACCGGTCGGCGTGTTCCTGCTGGTCGGCCCGAGCGGCGTCGGCAAGACCGAAACCGCACTGGCACTT
GCCGACCTGCTGTACGGCGGCGACCGTTTCATCACCACCATCAACATGTCCGAGTTCCAGGAGAAGCACACCGTTTCCCG
CCTGATCGGTGCACCGCCAGGTTACGTCGGTTACGGCGAGGGCGGCATGCTCACCGAGGCCGTGCGCCAGAAGCCGTACT
CGGTGGTGCTGCTCGATGAAGTCGAGAAGGCCGACCCGGACGTGCTCAACCTGTTCTACCAAATCTTCGACAAAGGCGTG
GCCAACGACGGCGAAGGGCGCGAGATCGACTTCCGCAATACGTTGATTCTGATGACCTCGAACCTGGGCAGCGACAAGAT
CAGCGACCTCTGCGAAGACGGCGCGCGTCCGACTGCCGAAGTGCTGGAAGAAACCATTCGCCCGGTGCTCAGCAAACACT
TCAAACCGGCGCTGCTGGCGCGGATGAAAGTGGTGCCGTACTACCCGGTCGGCGGCCCGGTGCTGCGCGAGCTGATCGAG
ATCAAGCTCGGTCGCTTGGGCGAGCGTCTGAACCGTCGCCAGCTGGATTTCACCTGGTGCCAGAACCTCGTCGATCACCT
GTCCGAGCGCTGCACCCAAAGCGAAAGCGGTGCACGCCTGATCGACCACTTGCTCGACCAGCACGTGCTGCCGCTGGTGG
CCGACCGCTTGCTCGACGCCATGGCCACCGGTGAAAGCCTCAAGCGCGTGCATGCGACGCTCGACGGTGAAGCCAGCGTG
ACCTGCGAGTTCGCCTGA

Upstream 100 bases:

>100_bases
AGAAGAACGACTGTCGCCTGGGTTGGACCAGTTGGCTGGGCTGCGAGAAAGCAGACGGCGTGGTGACCCTGGGCAGCAAA
ATTCATTAAGGACGTGAGCC

Downstream 100 bases:

>100_bases
GGTGAGTGTGATGTTCACTCAAGTGCCGCAGCCACTGCTCTATGCCGAAGCCTTGCTGGCGCAGTTCGCCAGCCTGTCGC
GCGCGGCGGACGGTGCTGCG

Product: ClpB protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 885; Mature: 885

Protein sequence:

>885_residues
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDADVDAGELSAALQSRVEHSAS
RNPVFAPELVQWLQDALLVANLELGQTSVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPA
AQGESLLERFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAAT
TWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVL
DTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAEAEMVALETQWTEQKQLAER
LLELRQQLAKAREAAAVEPVVTVEEDAEGTVIETHAAEVDEALSVEALEAQLNETHSALTAAQVKERLVSFEVCPRLVAE
VISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALAL
ADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
ANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIE
IKLGRLGERLNRRQLDFTWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGEASV
TCEFA

Sequences:

>Translated_885_residues
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDADVDAGELSAALQSRVEHSAS
RNPVFAPELVQWLQDALLVANLELGQTSVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPA
AQGESLLERFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAAT
TWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVL
DTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAEAEMVALETQWTEQKQLAER
LLELRQQLAKAREAAAVEPVVTVEEDAEGTVIETHAAEVDEALSVEALEAQLNETHSALTAAQVKERLVSFEVCPRLVAE
VISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALAL
ADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
ANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIE
IKLGRLGERLNRRQLDFTWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGEASV
TCEFA
>Mature_885_residues
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDADVDAGELSAALQSRVEHSAS
RNPVFAPELVQWLQDALLVANLELGQTSVEDAALILALLRNPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPA
AQGESLLERFTHNLTQQARDGKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSDAANLLKPALARGELRTIAAT
TWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLAQVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVL
DTACARVRISLAAAPESLERLRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAEAEMVALETQWTEQKQLAER
LLELRQQLAKAREAAAVEPVVTVEEDAEGTVIETHAAEVDEALSVEALEAQLNETHSALTAAQVKERLVSFEVCPRLVAE
VISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVHALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALAL
ADLLYGGDRFITTINMSEFQEKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
ANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLARMKVVPYYPVGGPVLRELIE
IKLGRLGERLNRRQLDFTWCQNLVDHLSERCTQSESGARLIDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGEASV
TCEFA

Specific function: Required for secretion of hcp1 probably by providing the energy source for its translocation [H]

COG id: COG0542

COG function: function code O; ATPases with chaperone activity, ATP-binding subunit

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the clpA/clpB family [H]

Homologues:

Organism=Homo sapiens, GI13540606, Length=295, Percent_Identity=33.5593220338983, Blast_Score=159, Evalue=8e-39,
Organism=Escherichia coli, GI1788943, Length=706, Percent_Identity=42.7762039660057, Blast_Score=545, Evalue=1e-156,
Organism=Escherichia coli, GI1787109, Length=395, Percent_Identity=39.746835443038, Blast_Score=258, Evalue=1e-69,
Organism=Saccharomyces cerevisiae, GI6320464, Length=732, Percent_Identity=38.9344262295082, Blast_Score=489, Evalue=1e-139,
Organism=Saccharomyces cerevisiae, GI6323002, Length=738, Percent_Identity=36.5853658536585, Blast_Score=447, Evalue=1e-126,

Paralogues:

None

Copy number: 560 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003593
- InterPro:   IPR013093
- InterPro:   IPR003959
- InterPro:   IPR017729
- InterPro:   IPR018368
- InterPro:   IPR001270
- InterPro:   IPR019489
- InterPro:   IPR023150 [H]

Pfam domain/function: PF00004 AAA; PF07724 AAA_2; PF10431 ClpB_D2-small [H]

EC number: NA

Molecular weight: Translated: 96372; Mature: 96372

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS00870 CLPAB_1 ; PS00871 CLPAB_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDA
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
DVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVANLELGQTSVEDAALILALLR
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPAAQGESLLERFTHNLTQQARD
CHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
GKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
CCCCCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHH
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCHH
AANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHH
QVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLER
HHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
LRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAEAEMVALETQWTEQKQLAER
HHHHHHHCHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLELRQQLAKAREAAAVEPVVTVEEDAEGTVIETHAAEVDEALSVEALEAQLNETHSALT
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
AAQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHH
ALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQ
HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHH
EKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
ANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLA
CCCCCCCEEECCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
RMKVVPYYPVGGPVLRELIEIKLGRLGERLNRRQLDFTWCQNLVDHLSERCTQSESGARL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
IDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGEASVTCEFA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECC
>Mature Secondary Structure
MINVDLQQLIQALDAETRRDLERSAERCVARGGSKILVEDLLLGLLERPNGLLSRALQDA
CCCCCHHHHHHHHCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHC
DVDAGELSAALQSRVEHSASRNPVFAPELVQWLQDALLVANLELGQTSVEDAALILALLR
CCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHH
NPMRYAGSRYQPLLAKLNIDRLKEFALSQQPQAAANGKPAAQGESLLERFTHNLTQQARD
CHHHHCCCCCCHHHHHCCHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCC
GKLDPVLCRDGAIRQMVDILARRRKNNPIVVGEAGVGKTAIVEGLASRIAAGEVPQVLKG
CCCCCEEECCCHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHCCCHHHHHHH
VELLSLDMGLLQAGASVKGEFERRLKGVIDEVKASPKPIILFIDEAHTLIGAGGNAGGSD
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCCEEEECCCCCCCHH
AANLLKPALARGELRTIAATTWAEYKKYFEKDPALARRFQPVQLHEPTVSEAVTILRGLA
HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCHHHHHHHHHHHH
QVYEKSHGIYLRDDAVVSAAELSARYLAGRQLPDKAVDVLDTACARVRISLAAAPESLER
HHHHHCCCEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHH
LRGELAEGGRQRQALRRDAEAGLLIDHEALEALEARLDEAEAEMVALETQWTEQKQLAER
HHHHHHHCHHHHHHHHHCCCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LLELRQQLAKAREAAAVEPVVTVEEDAEGTVIETHAAEVDEALSVEALEAQLNETHSALT
HHHHHHHHHHHHHHHCCCCEEEECCCCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHH
AAQVKERLVSFEVCPRLVAEVISAWTGVPLAQLAREHNAKVASFATDLRTRIRGQEQAVH
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHH
ALDRSMRATAAGLNKPDAPVGVFLLVGPSGVGKTETALALADLLYGGDRFITTINMSEFQ
HHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEECHHHHH
EKHTVSRLIGAPPGYVGYGEGGMLTEAVRQKPYSVVLLDEVEKADPDVLNLFYQIFDKGV
HHHHHHHHHCCCCCCCCCCCCCHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHCCC
ANDGEGREIDFRNTLILMTSNLGSDKISDLCEDGARPTAEVLEETIRPVLSKHFKPALLA
CCCCCCCEEECCCEEEEEECCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHH
RMKVVPYYPVGGPVLRELIEIKLGRLGERLNRRQLDFTWCQNLVDHLSERCTQSESGARL
HHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCHHHH
IDHLLDQHVLPLVADRLLDAMATGESLKRVHATLDGEASVTCEFA
HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Hydrolase; Acting on peptide bonds (Peptidases); Serine endopeptidases [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]