| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77460039
Identifier: 77460039
GI number: 77460039
Start: 4318094
End: 4318639
Strand: Direct
Name: 77460039
Synonym: Pfl01_3817
Alternate gene names: NA
Gene position: 4318094-4318639 (Clockwise)
Preceding gene: 77460036
Following gene: 77460040
Centisome position: 67.07
GC content: 55.68
Gene sequence:
>546_bases ATGGCAAAGCCCGCTGCACGCATCACCGATCCCACCAGTTGCCCCATCCCCGGACACGGCCCCAAAGCCATTGCCTCCGG ATCCCCCGACGTATTTTTCGACGGACTCGCCGCCGCCCGAAAAGACGACACCTGCACCTGCGGCAGCGCACTGGCCTCCG CCGTGTCCAGCACCGTATTCATCAACGGCAAAAATGCCGCGCTGGTCGGCACAGTGGGTTCACATGGAGACGTTGTGATC GGAGGATCGGGAACGGTGATCATCGGCGACTCACATACGCCTGCGCCGTTTACGCCGCCGACGCCGATGATCATTCATCC TGGATGGATCAGCTTCACCATCCCCGGTTCTGAGTCTTACCTAGGCATGAGCTGCGTTGCTCACTTCGAAGATGGTTCTA CCCAATCCGGAAATTTCGATATCACCAACACTGTGAAATTTCTCAACATCCGTGGAAAAGTCTGCCAAAAGCTAGAGTTC GGCTCTCAAGAAGAACCACCGACCGGCTCAATTTTCGACACGCTATTCAATGCATCATTGAAATAA
Upstream 100 bases:
>100_bases TTTAGATGGATAACCAACACCGCGCACGTCGCCGTCAGGCAACTGCCAAAGCAACTCTGATACAGTCGGTGCCAGCTAAT CCGTTGACAGGGAGTCAAAC
Downstream 100 bases:
>100_bases GGATTGTTTCATGACTGAGCCATTGCTCGTAACGGGAAGCTACGTTGTTCAAAAAGCACACGAGCTTGAGAATTCGCCAT TGGACATGGCGATTGCGGGT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 181; Mature: 180
Protein sequence:
>181_residues MAKPAARITDPTSCPIPGHGPKAIASGSPDVFFDGLAAARKDDTCTCGSALASAVSSTVFINGKNAALVGTVGSHGDVVI GGSGTVIIGDSHTPAPFTPPTPMIIHPGWISFTIPGSESYLGMSCVAHFEDGSTQSGNFDITNTVKFLNIRGKVCQKLEF GSQEEPPTGSIFDTLFNASLK
Sequences:
>Translated_181_residues MAKPAARITDPTSCPIPGHGPKAIASGSPDVFFDGLAAARKDDTCTCGSALASAVSSTVFINGKNAALVGTVGSHGDVVI GGSGTVIIGDSHTPAPFTPPTPMIIHPGWISFTIPGSESYLGMSCVAHFEDGSTQSGNFDITNTVKFLNIRGKVCQKLEF GSQEEPPTGSIFDTLFNASLK >Mature_180_residues AKPAARITDPTSCPIPGHGPKAIASGSPDVFFDGLAAARKDDTCTCGSALASAVSSTVFINGKNAALVGTVGSHGDVVIG GSGTVIIGDSHTPAPFTPPTPMIIHPGWISFTIPGSESYLGMSCVAHFEDGSTQSGNFDITNTVKFLNIRGKVCQKLEFG SQEEPPTGSIFDTLFNASLK
Specific function: Unknown
COG id: COG4104
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 18585; Mature: 18454
Theoretical pI: Translated: 5.97; Mature: 5.97
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.8 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.8 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MAKPAARITDPTSCPIPGHGPKAIASGSPDVFFDGLAAARKDDTCTCGSALASAVSSTVF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCHHHHHHHHHCCEEE INGKNAALVGTVGSHGDVVIGGSGTVIIGDSHTPAPFTPPTPMIIHPGWISFTIPGSESY ECCCCEEEEEECCCCCCEEECCCCEEEECCCCCCCCCCCCCCEEECCCEEEEEECCCCCC LGMSCVAHFEDGSTQSGNFDITNTVKFLNIRGKVCQKLEFGSQEEPPTGSIFDTLFNASL CCEEEEEEECCCCCCCCCEEECCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHCCC K C >Mature Secondary Structure AKPAARITDPTSCPIPGHGPKAIASGSPDVFFDGLAAARKDDTCTCGSALASAVSSTVF CCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCHHHCCCCCCCCHHHHHHHHHCCEEE INGKNAALVGTVGSHGDVVIGGSGTVIIGDSHTPAPFTPPTPMIIHPGWISFTIPGSESY ECCCCEEEEEECCCCCCEEECCCCEEEECCCCCCCCCCCCCCEEECCCEEEEEECCCCCC LGMSCVAHFEDGSTQSGNFDITNTVKFLNIRGKVCQKLEFGSQEEPPTGSIFDTLFNASL CCEEEEEEECCCCCCCCCEEECCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHCCC K C
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA