| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77460005
Identifier: 77460005
GI number: 77460005
Start: 4279638
End: 4281191
Strand: Direct
Name: 77460005
Synonym: Pfl01_3783
Alternate gene names: NA
Gene position: 4279638-4281191 (Clockwise)
Preceding gene: 77460004
Following gene: 77460010
Centisome position: 66.47
GC content: 56.76
Gene sequence:
>1554_bases ATGAGAGGAACCCTTGCTGGTGTTGAAACCATGAAACCTCCTATCGCGCATCAGTTCATTGCCTTGATGTTCCTCATCGC CCTGAGCGGTTGCACCACGCTCGACGGTGCGGCCACTCAGGATTGGGGAGAAGGCGCAGTCAACCTCTCCCCTGCCGAAA TTCTGAACAACGCAGCCGGGCGCTACGATCACTGGCAAGCCATTGCTCGCGTCAAGGTTGAAGGCAGTTCTGTCTGCTCG GGCAGCCTGATCGATACCCGAGGCGCAAACGATGACCGCAGCGGCCCGGCCTACATCCTGACGTCAGGACATTGCGCAAA AGGTGACGCTAACCGGTACGTCGAAAACGCCCCGGCGTCCGGTCTCGTTACCTTCAACTTTTTCCAGGACACCCAGTCCC AACAAAAGCGCTACCCGATCGTTGGAATCGAGTGGAGCACCCTGCGAGGTCTCGACATTGCAATTCTCAGGCTCGATCGC ACACTCAACCAATTGATGACCGATGGCATCACGCCGCTCAAAGTGGCGTCGCAACCGCTGGCTGTCGACAGTGATGTGCT GGTGGTTGGCGCACCGATGGATGGCCATGTGCAACGCGCCGCCTGCCCTCAGGAGCACCGCGCGGATGTTTTCGAAGCGG GTTGGACATGGCCCGGACAATTCAGCAACCGTTGCCGGGAGGTACGGCCCGGCATTTCGGGTTCACCTGTCTTGAATCGG TACAGCAATGAAATCGTGGCGATCGTCGGCACCACAACGCAAGGCAGCGGGCTCTCACGTTGCACTCGCAACGCCCCGTG CGAAGTCAACAAAGGGGAATCGATAAAAATACCGGAGACCAACTACGCCACCGGAGCAGCGCAGCTGAACCAGTGTTTTA CAGCCACTCATTTCAACCCGAAAAACCCGGAGTGCCCATTGGGCCGCGCGACAAATTTCGATCCCATATTTGGTGACGTC TATATGAGGTTGGTCCGTGGCGCGAATGGGGAATTCATCCCTTTGCAATGGAAGCAATCGTTCACCAGCGATCAACCGTT CTATCGGGTAAGGCTTGTAAAGACATTGGCCGACTGTGCGTCGGACGTCGGTTACGATCCGGTACAACCGAGCCATGGAG ACGATTCAGACAGTTCGACTCAGACGCTGCGCGATGGACCGGGTCTGTATTTCCTGTGTGTGGTCGGGCAACAACATAAT GCAGGGCCCGGGGAAAGATGGGCCGGCCGCAATGCAAGAATCTATTACCGCTGGGCTCTGGCAGAACCCGTCAAGACGCC GCCTGCCTACAGCGCATTTGAAAGTGCAAAGGATGAGTTCACCGTACAACCGCTCGGGATAACGCCGGATCTGGACGTCA GTCGCTACCAATACAAAAGTGGTGAACCAGAAATGGTCGACTGCCAAAGCAGTGAGGGTTACAAGTCGGTCAGGCCGCCG CTGCTGGACTTTAAGGTTTCGGTGGGGGACGGCCCGAAAAAAGTCTGCCTCAAGACCACAGACATGGCAGGCAATCCCTC TCCAATTAGTGATTTTGCGTTGCCCAGTCAGTGA
Upstream 100 bases:
>100_bases CAAAGCGCTCAAGGTCTGAGCCGACAGACATCTAGCGGCCGATGTTGGCTGAACTGACTGTCAGATCTGACAGTAGACAC CGGTAGCCTGGGATTCCAGC
Downstream 100 bases:
>100_bases TGACCGGCAACTGGCTCGTTCAAACCTAATGAAAAACAGGCGGCTGTCACCAGCCGCCTGCCCTGCCAATCAGAAACCGA CGCTGGCCTGCACGAAGAAC
Product: trypsin domain-containing protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 517; Mature: 517
Protein sequence:
>517_residues MRGTLAGVETMKPPIAHQFIALMFLIALSGCTTLDGAATQDWGEGAVNLSPAEILNNAAGRYDHWQAIARVKVEGSSVCS GSLIDTRGANDDRSGPAYILTSGHCAKGDANRYVENAPASGLVTFNFFQDTQSQQKRYPIVGIEWSTLRGLDIAILRLDR TLNQLMTDGITPLKVASQPLAVDSDVLVVGAPMDGHVQRAACPQEHRADVFEAGWTWPGQFSNRCREVRPGISGSPVLNR YSNEIVAIVGTTTQGSGLSRCTRNAPCEVNKGESIKIPETNYATGAAQLNQCFTATHFNPKNPECPLGRATNFDPIFGDV YMRLVRGANGEFIPLQWKQSFTSDQPFYRVRLVKTLADCASDVGYDPVQPSHGDDSDSSTQTLRDGPGLYFLCVVGQQHN AGPGERWAGRNARIYYRWALAEPVKTPPAYSAFESAKDEFTVQPLGITPDLDVSRYQYKSGEPEMVDCQSSEGYKSVRPP LLDFKVSVGDGPKKVCLKTTDMAGNPSPISDFALPSQ
Sequences:
>Translated_517_residues MRGTLAGVETMKPPIAHQFIALMFLIALSGCTTLDGAATQDWGEGAVNLSPAEILNNAAGRYDHWQAIARVKVEGSSVCS GSLIDTRGANDDRSGPAYILTSGHCAKGDANRYVENAPASGLVTFNFFQDTQSQQKRYPIVGIEWSTLRGLDIAILRLDR TLNQLMTDGITPLKVASQPLAVDSDVLVVGAPMDGHVQRAACPQEHRADVFEAGWTWPGQFSNRCREVRPGISGSPVLNR YSNEIVAIVGTTTQGSGLSRCTRNAPCEVNKGESIKIPETNYATGAAQLNQCFTATHFNPKNPECPLGRATNFDPIFGDV YMRLVRGANGEFIPLQWKQSFTSDQPFYRVRLVKTLADCASDVGYDPVQPSHGDDSDSSTQTLRDGPGLYFLCVVGQQHN AGPGERWAGRNARIYYRWALAEPVKTPPAYSAFESAKDEFTVQPLGITPDLDVSRYQYKSGEPEMVDCQSSEGYKSVRPP LLDFKVSVGDGPKKVCLKTTDMAGNPSPISDFALPSQ >Mature_517_residues MRGTLAGVETMKPPIAHQFIALMFLIALSGCTTLDGAATQDWGEGAVNLSPAEILNNAAGRYDHWQAIARVKVEGSSVCS GSLIDTRGANDDRSGPAYILTSGHCAKGDANRYVENAPASGLVTFNFFQDTQSQQKRYPIVGIEWSTLRGLDIAILRLDR TLNQLMTDGITPLKVASQPLAVDSDVLVVGAPMDGHVQRAACPQEHRADVFEAGWTWPGQFSNRCREVRPGISGSPVLNR YSNEIVAIVGTTTQGSGLSRCTRNAPCEVNKGESIKIPETNYATGAAQLNQCFTATHFNPKNPECPLGRATNFDPIFGDV YMRLVRGANGEFIPLQWKQSFTSDQPFYRVRLVKTLADCASDVGYDPVQPSHGDDSDSSTQTLRDGPGLYFLCVVGQQHN AGPGERWAGRNARIYYRWALAEPVKTPPAYSAFESAKDEFTVQPLGITPDLDVSRYQYKSGEPEMVDCQSSEGYKSVRPP LLDFKVSVGDGPKKVCLKTTDMAGNPSPISDFALPSQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 56153; Mature: 56153
Theoretical pI: Translated: 5.91; Mature: 5.91
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRGTLAGVETMKPPIAHQFIALMFLIALSGCTTLDGAATQDWGEGAVNLSPAEILNNAAG CCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC RYDHWQAIARVKVEGSSVCSGSLIDTRGANDDRSGPAYILTSGHCAKGDANRYVENAPAS CCHHHEEEEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCC GLVTFNFFQDTQSQQKRYPIVGIEWSTLRGLDIAILRLDRTLNQLMTDGITPLKVASQPL CEEEEEEHHCCHHHHHCCCEEEEEHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHHCCCCC AVDSDVLVVGAPMDGHVQRAACPQEHRADVFEAGWTWPGQFSNRCREVRPGISGSPVLNR EECCCEEEEECCCCCCCHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHH YSNEIVAIVGTTTQGSGLSRCTRNAPCEVNKGESIKIPETNYATGAAQLNQCFTATHFNP CCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHEECCCCC KNPECPLGRATNFDPIFGDVYMRLVRGANGEFIPLQWKQSFTSDQPFYRVRLVKTLADCA CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHH SDVGYDPVQPSHGDDSDSSTQTLRDGPGLYFLCVVGQQHNAGPGERWAGRNARIYYRWAL HHCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCEEEEEEEE AEPVKTPPAYSAFESAKDEFTVQPLGITPDLDVSRYQYKSGEPEMVDCQSSEGYKSVRPP CCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHEECCCCCCCEEECCCCCCCHHCCCC LLDFKVSVGDGPKKVCLKTTDMAGNPSPISDFALPSQ EEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCC >Mature Secondary Structure MRGTLAGVETMKPPIAHQFIALMFLIALSGCTTLDGAATQDWGEGAVNLSPAEILNNAAG CCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCC RYDHWQAIARVKVEGSSVCSGSLIDTRGANDDRSGPAYILTSGHCAKGDANRYVENAPAS CCHHHEEEEEEEECCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCC GLVTFNFFQDTQSQQKRYPIVGIEWSTLRGLDIAILRLDRTLNQLMTDGITPLKVASQPL CEEEEEEHHCCHHHHHCCCEEEEEHHHCCCCEEEEEHHHHHHHHHHHCCCCCHHHCCCCC AVDSDVLVVGAPMDGHVQRAACPQEHRADVFEAGWTWPGQFSNRCREVRPGISGSPVLNR EECCCEEEEECCCCCCCHHHCCCHHHHCHHHHCCCCCCHHHHHHHHHHCCCCCCCHHHHH YSNEIVAIVGTTTQGSGLSRCTRNAPCEVNKGESIKIPETNYATGAAQLNQCFTATHFNP CCCCEEEEEECCCCCCCHHHHHCCCCCCCCCCCEEECCCCCCCCCHHHHHHHHEECCCCC KNPECPLGRATNFDPIFGDVYMRLVRGANGEFIPLQWKQSFTSDQPFYRVRLVKTLADCA CCCCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEEHHHCCCCCCCHHHHHHHHHHHHHH SDVGYDPVQPSHGDDSDSSTQTLRDGPGLYFLCVVGQQHNAGPGERWAGRNARIYYRWAL HHCCCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEECCCCCCCCCHHHCCCCCEEEEEEEE AEPVKTPPAYSAFESAKDEFTVQPLGITPDLDVSRYQYKSGEPEMVDCQSSEGYKSVRPP CCCCCCCCCHHHHHHCCCCEEEEECCCCCCCCCHHEECCCCCCCEEECCCCCCCHHCCCC LLDFKVSVGDGPKKVCLKTTDMAGNPSPISDFALPSQ EEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA