| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
Click here to switch to the map view.
The map label for this gene is 77459975
Identifier: 77459975
GI number: 77459975
Start: 4241542
End: 4242216
Strand: Direct
Name: 77459975
Synonym: Pfl01_3753
Alternate gene names: NA
Gene position: 4241542-4242216 (Clockwise)
Preceding gene: 77459972
Following gene: 77459979
Centisome position: 65.88
GC content: 60.15
Gene sequence:
>675_bases ATGACGAACTTGATGAAAGTCGCCAACCGCTTCAAACATCGCGCGTATGTGGCCCTGCCCACCCTGCTGGCGGTCAGCGC GCTGTTCCTGTCGCTGGAATCCAGCGAAAGCCGTGCGCAACCGGTGGACGGCACCCAGACCCTGGTGTTCCTGCGTCACG CAGAGAAACCGGCCGGCGGTCTCGGCCAGCTCAACTGCCAGGGCCTGAACCGGGCCATCGACCTGTCGACCCTGCTGCCG GAAAAATTCGGCAAGGCCGACTATGTGTTCGCCGCCAACCCGACGCGCAATGTCGAAGAAGGCGAACTGGACAATTCCTA CAGCTACATCCGCCCGCTGATGACCATCAGCCCGGCCGCGATCAAACTCGGCCTGCCGGTGAACATCGAGTTCTCGGCCA ACGACACCAGTGACCTGGCCCGGGAACTGACCGACGACAAGTACCACAACTCGACCATCTACACCGCGTGGTCCCATGGT TACCTTCCTGAATTGATCAACAAGGTTGCCGGCAATGCGGTAGGCGGAAAACAGAAAATCACCGATGACTGGGAATCCAG CGACTACGACTCGCTGTATGTGCTGACCCTGACCTGGCACAACGGCAAGGCCAGCCTGCAGAGCCACAGCTACAAACAGG GGCTGGATAACGGCCAGGAAAGCTGTCCGACCTGA
Upstream 100 bases:
>100_bases CTCCAAGCAAGCCAGTGATGACAGGGAAAACACCCGGCGCGCATGCACCGGTGCAGAGGTTTGTCAGCCTTAACCGAACA GACTGAAGACGCCTTATCCC
Downstream 100 bases:
>100_bases GAGTGCCCGGGGCCCGTTCGGGCCCCGTCAGGCCTGGGATTTGCCCCGTTGACGCAGGTACTCGATAACGGCCTGCCGCT CCCCGGCAAACTCGATCCGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 224; Mature: 223
Protein sequence:
>224_residues MTNLMKVANRFKHRAYVALPTLLAVSALFLSLESSESRAQPVDGTQTLVFLRHAEKPAGGLGQLNCQGLNRAIDLSTLLP EKFGKADYVFAANPTRNVEEGELDNSYSYIRPLMTISPAAIKLGLPVNIEFSANDTSDLARELTDDKYHNSTIYTAWSHG YLPELINKVAGNAVGGKQKITDDWESSDYDSLYVLTLTWHNGKASLQSHSYKQGLDNGQESCPT
Sequences:
>Translated_224_residues MTNLMKVANRFKHRAYVALPTLLAVSALFLSLESSESRAQPVDGTQTLVFLRHAEKPAGGLGQLNCQGLNRAIDLSTLLP EKFGKADYVFAANPTRNVEEGELDNSYSYIRPLMTISPAAIKLGLPVNIEFSANDTSDLARELTDDKYHNSTIYTAWSHG YLPELINKVAGNAVGGKQKITDDWESSDYDSLYVLTLTWHNGKASLQSHSYKQGLDNGQESCPT >Mature_223_residues TNLMKVANRFKHRAYVALPTLLAVSALFLSLESSESRAQPVDGTQTLVFLRHAEKPAGGLGQLNCQGLNRAIDLSTLLPE KFGKADYVFAANPTRNVEEGELDNSYSYIRPLMTISPAAIKLGLPVNIEFSANDTSDLARELTDDKYHNSTIYTAWSHGY LPELINKVAGNAVGGKQKITDDWESSDYDSLYVLTLTWHNGKASLQSHSYKQGLDNGQESCPT
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 24641; Mature: 24510
Theoretical pI: Translated: 5.94; Mature: 5.94
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 2.2 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTNLMKVANRFKHRAYVALPTLLAVSALFLSLESSESRAQPVDGTQTLVFLRHAEKPAGG CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC LGQLNCQGLNRAIDLSTLLPEKFGKADYVFAANPTRNVEEGELDNSYSYIRPLMTISPAA CCCEECCCCCCEEHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC IKLGLPVNIEFSANDTSDLARELTDDKYHNSTIYTAWSHGYLPELINKVAGNAVGGKQKI EEECCCEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC TDDWESSDYDSLYVLTLTWHNGKASLQSHSYKQGLDNGQESCPT CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCCHHCCCC >Mature Secondary Structure TNLMKVANRFKHRAYVALPTLLAVSALFLSLESSESRAQPVDGTQTLVFLRHAEKPAGG CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCCC LGQLNCQGLNRAIDLSTLLPEKFGKADYVFAANPTRNVEEGELDNSYSYIRPLMTISPAA CCCEECCCCCCEEHHHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCHHHHHHHHHCCCCC IKLGLPVNIEFSANDTSDLARELTDDKYHNSTIYTAWSHGYLPELINKVAGNAVGGKQKI EEECCCEEEEECCCCHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHHHHHCCCCCCCCCC TDDWESSDYDSLYVLTLTWHNGKASLQSHSYKQGLDNGQESCPT CCCCCCCCCCEEEEEEEEEECCCCCHHHHHHHHHCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA