| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is yejA [C]
Identifier: 77459963
GI number: 77459963
Start: 4228451
End: 4230322
Strand: Direct
Name: yejA [C]
Synonym: Pfl01_3741
Alternate gene names: 77459963
Gene position: 4228451-4230322 (Clockwise)
Preceding gene: 77459962
Following gene: 77459964
Centisome position: 65.68
GC content: 63.51
Gene sequence:
>1872_bases ATGACATTCATGCGCAACATGGCCGGCCTGCTGCTCGGCAGCGCGCTGCTGTGCAACGCGGCAGCTGCGCTGGCCGGCGG CAGCTACGCGATGACGGTGTACGGCGAGGCGCCGAAATACCCCGCCGGTTTCCAGCACTTCGATTTCGTCAATCCCGACG CCCCCAAGGGTGGCTCGCTCAGCCGCGCTTCGATGGAGATCGGTCAGTACAACTACATCACCCCGTATGCCGATCAGGGC ATTTCCGTGGTGCAGGTCAACGACTGGGTGTATTCGCCGCTGGCGTTCCGCTCGCTGGACGAGCCCTACACCGTCTACGG TCTGGTGGCGCAAACCATGGAGCGCGATCCCGACGGTCTGTGGGTGCGTTTCAACCTGAATCCCGAGGCGCGTTTCGCCG ATGGCACGCCGATCACCGCCGAGGACGTGCGCTACACCTTCGAACTGTTGATGACCAAGGGCAGCCTGAGTTATCGCCAG CAATACGCCGACGTGCAGGACGTGCTGATCGAAGGCCCGCGGCAGATTCGCTTCACCTTCAAGAACAACCTCAACCGCAC CCTGGCGCTGGATCTGGCGTCGCTGCGACCGGTGCCCGAGCACTGGTGGAAAACCCGCGACTTCGCCAACGGCGGCGGCT TCGAGCCTCCGCTGGGCAGCGGCCCGTACCGGGTGAGCAAGGTGGACGCAGGACGCAGCATCAGTTTTCAGAGAGATCCC CACTGGTGGGGCAAAGACCTGCCGGTCAGTCGCGGGATGTACAACTTCGACAGCCTGACCGTGAATTTCTACGGCGACAC CGATGTCGCCCGACAATTGCTGCAGGCCGGCGCGTTCGACTACAACCGCGAGTTTTCCTCGTCCGGCTACGTGGTCGGCT ACGACAGCCCGGCCCTGCGCGACGGTCGCCTGCAACAGGCAATTCTCGCTCCGGACAAACCGACCTGCGCCCAGGGTTTC GTGTTCAACCTGCAGAATCCGCTGTTCAAGGATCGCCGCGTGCGTCAGGCGCTGAGCCTGCTGTGGGATTTCGAGTGGAC CAACAAGCAGATGATGCGCGGCTTCTACGTACGCCAGAACAGCTACTGGCCGAAGAGTGAAATGGCCGCCACCGCACTGC CCGACGCCGGGGAGCTGGCGATCCTCGAACCGCTGCGCGGACAGATTCCGGACGAGGTTTTCAGCCGGGTCTATCAGGCG CCGAAAACCGATGGCAGCGGCTACATTCGCGACAAGCAGTTGCAGGCCCTGAAGCTGTTGGCCGAGGCCGGATGGACGCC GAAAAACAACCGACTGGTGAACGCCGCCGGCGAGCCCTTCGAATTCACCTTCCTCGACGGCCAGGGCGGCTTCGACCGCA TGCTGCTGCCGTACAAACGCACCCTGGCGCAGATCGGCATCACCCTGAATCTGCGACGTATCGATTCGGCGCAATACATC AACCGGCTCAACGCCCGGGACTACGACATGATCGTCACCAGTTTCCCGCGCAGCGGCGATCCGATCGTCTCGCCGGGCCG CGAGTTGTACAGCCTGTATGCCTCACAGAGCGCCACACAAGTCGGCAGCTCCAATTCGATGGTGCTGGCCGATCCTGCGG TTGACCGGCTGATCGACGGCCTGGTCCAGGCCAATACCCGCGACGCCATGGTGCGTTACGCCCGCGCCCTCGACCGGGTG CTGCAATGGGGTGACTACATGATTCCCAACTACTACTCCAAAGGCACGCCGACGGTGTTTCAGAACCGCTTCGGCAGGCC GCCGGTGCAGCCGATCTACAGCGAAGGCCTCGATACCTGGTGGGAGGTCTCGGCCAAGCCGCTGACCAACCAGCAGATGA GCGCCCTGCGCCAGCTCGCGGGGGGCCAGTGA
Upstream 100 bases:
>100_bases GGGCCGCGCAAGACTCCGGCCGGCCCCTTCCCCTTGCGAATTCGCATCCCGCAGCGGCCAGCCGCCGCTCCGGGCTTTTC CCGCTCAGAGGAACGACTTC
Downstream 100 bases:
>100_bases CATGTGGCGTTATCTGAGTCGACGTCTGTTGCTGATCATCCCGACGCTGCTGTGCATTCTGGTGGTCAACTTCGTCATCG TGCAGGCCGCGCCCGGCGGC
Product: extracellular solute-binding protein
Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]
Alternate protein names: NA
Number of amino acids: Translated: 623; Mature: 622
Protein sequence:
>623_residues MTFMRNMAGLLLGSALLCNAAAALAGGSYAMTVYGEAPKYPAGFQHFDFVNPDAPKGGSLSRASMEIGQYNYITPYADQG ISVVQVNDWVYSPLAFRSLDEPYTVYGLVAQTMERDPDGLWVRFNLNPEARFADGTPITAEDVRYTFELLMTKGSLSYRQ QYADVQDVLIEGPRQIRFTFKNNLNRTLALDLASLRPVPEHWWKTRDFANGGGFEPPLGSGPYRVSKVDAGRSISFQRDP HWWGKDLPVSRGMYNFDSLTVNFYGDTDVARQLLQAGAFDYNREFSSSGYVVGYDSPALRDGRLQQAILAPDKPTCAQGF VFNLQNPLFKDRRVRQALSLLWDFEWTNKQMMRGFYVRQNSYWPKSEMAATALPDAGELAILEPLRGQIPDEVFSRVYQA PKTDGSGYIRDKQLQALKLLAEAGWTPKNNRLVNAAGEPFEFTFLDGQGGFDRMLLPYKRTLAQIGITLNLRRIDSAQYI NRLNARDYDMIVTSFPRSGDPIVSPGRELYSLYASQSATQVGSSNSMVLADPAVDRLIDGLVQANTRDAMVRYARALDRV LQWGDYMIPNYYSKGTPTVFQNRFGRPPVQPIYSEGLDTWWEVSAKPLTNQQMSALRQLAGGQ
Sequences:
>Translated_623_residues MTFMRNMAGLLLGSALLCNAAAALAGGSYAMTVYGEAPKYPAGFQHFDFVNPDAPKGGSLSRASMEIGQYNYITPYADQG ISVVQVNDWVYSPLAFRSLDEPYTVYGLVAQTMERDPDGLWVRFNLNPEARFADGTPITAEDVRYTFELLMTKGSLSYRQ QYADVQDVLIEGPRQIRFTFKNNLNRTLALDLASLRPVPEHWWKTRDFANGGGFEPPLGSGPYRVSKVDAGRSISFQRDP HWWGKDLPVSRGMYNFDSLTVNFYGDTDVARQLLQAGAFDYNREFSSSGYVVGYDSPALRDGRLQQAILAPDKPTCAQGF VFNLQNPLFKDRRVRQALSLLWDFEWTNKQMMRGFYVRQNSYWPKSEMAATALPDAGELAILEPLRGQIPDEVFSRVYQA PKTDGSGYIRDKQLQALKLLAEAGWTPKNNRLVNAAGEPFEFTFLDGQGGFDRMLLPYKRTLAQIGITLNLRRIDSAQYI NRLNARDYDMIVTSFPRSGDPIVSPGRELYSLYASQSATQVGSSNSMVLADPAVDRLIDGLVQANTRDAMVRYARALDRV LQWGDYMIPNYYSKGTPTVFQNRFGRPPVQPIYSEGLDTWWEVSAKPLTNQQMSALRQLAGGQ >Mature_622_residues TFMRNMAGLLLGSALLCNAAAALAGGSYAMTVYGEAPKYPAGFQHFDFVNPDAPKGGSLSRASMEIGQYNYITPYADQGI SVVQVNDWVYSPLAFRSLDEPYTVYGLVAQTMERDPDGLWVRFNLNPEARFADGTPITAEDVRYTFELLMTKGSLSYRQQ YADVQDVLIEGPRQIRFTFKNNLNRTLALDLASLRPVPEHWWKTRDFANGGGFEPPLGSGPYRVSKVDAGRSISFQRDPH WWGKDLPVSRGMYNFDSLTVNFYGDTDVARQLLQAGAFDYNREFSSSGYVVGYDSPALRDGRLQQAILAPDKPTCAQGFV FNLQNPLFKDRRVRQALSLLWDFEWTNKQMMRGFYVRQNSYWPKSEMAATALPDAGELAILEPLRGQIPDEVFSRVYQAP KTDGSGYIRDKQLQALKLLAEAGWTPKNNRLVNAAGEPFEFTFLDGQGGFDRMLLPYKRTLAQIGITLNLRRIDSAQYIN RLNARDYDMIVTSFPRSGDPIVSPGRELYSLYASQSATQVGSSNSMVLADPAVDRLIDGLVQANTRDAMVRYARALDRVL QWGDYMIPNYYSKGTPTVFQNRFGRPPVQPIYSEGLDTWWEVSAKPLTNQQMSALRQLAGGQ
Specific function: Unknown
COG id: COG4166
COG function: function code E; ABC-type oligopeptide transport system, periplasmic component
Gene ontology:
Cell location: Periplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the bacterial solute-binding protein 5 family [H]
Homologues:
Organism=Escherichia coli, GI87082063, Length=595, Percent_Identity=36.4705882352941, Blast_Score=372, Evalue=1e-104,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR000914 [H]
Pfam domain/function: PF00496 SBP_bac_5 [H]
EC number: NA
Molecular weight: Translated: 69979; Mature: 69848
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.7 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.6 %Met (Mature Protein) 2.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTFMRNMAGLLLGSALLCNAAAALAGGSYAMTVYGEAPKYPAGFQHFDFVNPDAPKGGSL CCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC SRASMEIGQYNYITPYADQGISVVQVNDWVYSPLAFRSLDEPYTVYGLVAQTMERDPDGL CHHHHHHCCCCCCCCCCCCCEEEEEECCCEECCHHHHCCCCCHHHHHHHHHHHHCCCCCE WVRFNLNPEARFADGTPITAEDVRYTFELLMTKGSLSYRQQYADVQDVLIEGPRQIRFTF EEEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE KNNLNRTLALDLASLRPVPEHWWKTRDFANGGGFEPPLGSGPYRVSKVDAGRSISFQRDP CCCCCCEEEEEHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC HWWGKDLPVSRGMYNFDSLTVNFYGDTDVARQLLQAGAFDYNREFSSSGYVVGYDSPALR CCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC DGRLQQAILAPDKPTCAQGFVFNLQNPLFKDRRVRQALSLLWDFEWTNKQMMRGFYVRQN CCCHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEECC SYWPKSEMAATALPDAGELAILEPLRGQIPDEVFSRVYQAPKTDGSGYIRDKQLQALKLL CCCCHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHH AEAGWTPKNNRLVNAAGEPFEFTFLDGQGGFDRMLLPYKRTLAQIGITLNLRRIDSAQYI HHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHH NRLNARDYDMIVTSFPRSGDPIVSPGRELYSLYASQSATQVGSSNSMVLADPAVDRLIDG HHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH LVQANTRDAMVRYARALDRVLQWGDYMIPNYYSKGTPTVFQNRFGRPPVQPIYSEGLDTW HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCC WEVSAKPLTNQQMSALRQLAGGQ CCCCCCCCCHHHHHHHHHHHCCC >Mature Secondary Structure TFMRNMAGLLLGSALLCNAAAALAGGSYAMTVYGEAPKYPAGFQHFDFVNPDAPKGGSL CHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCC SRASMEIGQYNYITPYADQGISVVQVNDWVYSPLAFRSLDEPYTVYGLVAQTMERDPDGL CHHHHHHCCCCCCCCCCCCCEEEEEECCCEECCHHHHCCCCCHHHHHHHHHHHHCCCCCE WVRFNLNPEARFADGTPITAEDVRYTFELLMTKGSLSYRQQYADVQDVLIEGPRQIRFTF EEEEECCCCCEECCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCEEEEEE KNNLNRTLALDLASLRPVPEHWWKTRDFANGGGFEPPLGSGPYRVSKVDAGRSISFQRDP CCCCCCEEEEEHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCC HWWGKDLPVSRGMYNFDSLTVNFYGDTDVARQLLQAGAFDYNREFSSSGYVVGYDSPALR CCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHHCCCCCCCCCCCCCEEEECCCCCCC DGRLQQAILAPDKPTCAQGFVFNLQNPLFKDRRVRQALSLLWDFEWTNKQMMRGFYVRQN CCCHHHHHCCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHEEEEECC SYWPKSEMAATALPDAGELAILEPLRGQIPDEVFSRVYQAPKTDGSGYIRDKQLQALKLL CCCCHHHHHHHCCCCCCCEEEECCCCCCCCHHHHHHHHCCCCCCCCCCEEHHHHHHHHHH AEAGWTPKNNRLVNAAGEPFEFTFLDGQGGFDRMLLPYKRTLAQIGITLNLRRIDSAQYI HHCCCCCCCCEEEECCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHH NRLNARDYDMIVTSFPRSGDPIVSPGRELYSLYASQSATQVGSSNSMVLADPAVDRLIDG HHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEECHHHHHHHHH LVQANTRDAMVRYARALDRVLQWGDYMIPNYYSKGTPTVFQNRFGRPPVQPIYSEGLDTW HHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHCCCCCCCCHHHHCCCCCC WEVSAKPLTNQQMSALRQLAGGQ CCCCCCCCCHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: ATP; oligopeptides [Periplasm]; H2O [C]
Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA