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The map label for this gene is ytbD [H]

Identifier: 77459930

GI number: 77459930

Start: 4194762

End: 4195922

Strand: Reverse

Name: ytbD [H]

Synonym: Pfl01_3708

Alternate gene names: 77459930

Gene position: 4195922-4194762 (Counterclockwise)

Preceding gene: 77459932

Following gene: 77459928

Centisome position: 65.17

GC content: 63.74

Gene sequence:

>1161_bases
ATGCTGTTGCCCATCCTTCTGTTGTCCGCCGCCGGGTTCACGGTGCTGACCACGGAGTTCGTCATCGTCGGCCTGCTGCC
GGCGATTGCTCGCGACCTGGCCGTCACCATCCCGCAGGCCGGGCTGCTGGTGACTCTGTTCGCTTTCACCGTGGCGATGT
TCGGTCCATTCTTGACCGCCTATTTCGCCCGCTTCGAGCGCCGCAAGCTGTTCATCACCATCCTGATCATGTTCGGTCTG
GCCAATACCGTGGCCGCGTTGGCGCCGAACATCTGGGTCATGGCCATCGCCCGGCTGATCCCGGCGCTGGGGTTGCCGGT
GTTCTGGGCGCTGGCCAGCGAAACGGCGGTGGATATCGTCGGCCCGGACTACGCCGGTCGCGCGATCGCCAAGATCGGCT
TCGGCATTGTCTGCGCCACCGTGTTCGGAATTCCGGTTGGTACGCTGATTTCCGATGCGTTCGGCTGGCGCAGCGCGTTC
GCCATTCTGGCGGTGATCGCGTTCGCCAAGGCGCTGCTGCTGTTTGTCTACCTGCCGAAAACCAGCCTGCACCAGCATCA
GGTCAGTTTCGCTTCGCAGTTCAAGATTCTGCGCAGCCCGCTGATGCTGGGTCATGTGCTGCTGTCGATCCTGGTGTTCA
GCGGCATGTTCACCGCCTACACCTATCTGGCGGACATCCTTGAACGTCTGGCCGGCTTCAATGGCACCGTGGTCGGCTGG
TGTCTGATGGGCTTTGGCGCGGTCGGTCTGATCGGCAACTCGCTGGGTGGTCGCGCGGTGGATCGTCATCCGCTGATGGC
GTCGGTGATGTTCTGCGCGTTCATGATCCCCGGGATGGTGGCGCTGGTGCCGAACATCAATTCGTCGCTGGGTCTGGCGG
CGGCGATGGGCATCTGGGGCGTGACGCAGGCGGCGCTGTTTCTGGTCAGTCACGTGCGCTTGATGAAAGCCGCACCTGAG
GCGCCGGCCTTCGCCGCGTCGCTGAACATCGCCGGGGCCAACCTCGGGATTGGTCTGGGCGCGATCATTGGCGGTCGAGT
GATCGACAGCGCCGGTCTGGGCTTTGTGGGCTTCGCCGCCGCCGGGTTCATTCTGCTGTCGATTTTCCTCGCCATGGTGC
TGATGGTGCTCAAGCCGCGCGACGCCTGTGCGCCGGCTTAA

Upstream 100 bases:

>100_bases
ACTCGGGAAACACTCTGTTAAGATTGCGCATCCTTATTTTCAAGTTCTGCCAGCGGGCCCTCGGGTCAACGCTGGTGTCG
TCGTTTTGCTGGAGTTCCTC

Downstream 100 bases:

>100_bases
AAGGCTGTAAACAGCTCGCGTCGGGCACCTTCGGTAATCGCTTTGATACCGGGGTGCTTGACCTTGCGCTCCACCGAGAT
CGCGTAGAACGACTCGCTCA

Product: major facilitator transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 386; Mature: 386

Protein sequence:

>386_residues
MLLPILLLSAAGFTVLTTEFVIVGLLPAIARDLAVTIPQAGLLVTLFAFTVAMFGPFLTAYFARFERRKLFITILIMFGL
ANTVAALAPNIWVMAIARLIPALGLPVFWALASETAVDIVGPDYAGRAIAKIGFGIVCATVFGIPVGTLISDAFGWRSAF
AILAVIAFAKALLLFVYLPKTSLHQHQVSFASQFKILRSPLMLGHVLLSILVFSGMFTAYTYLADILERLAGFNGTVVGW
CLMGFGAVGLIGNSLGGRAVDRHPLMASVMFCAFMIPGMVALVPNINSSLGLAAAMGIWGVTQAALFLVSHVRLMKAAPE
APAFAASLNIAGANLGIGLGAIIGGRVIDSAGLGFVGFAAAGFILLSIFLAMVLMVLKPRDACAPA

Sequences:

>Translated_386_residues
MLLPILLLSAAGFTVLTTEFVIVGLLPAIARDLAVTIPQAGLLVTLFAFTVAMFGPFLTAYFARFERRKLFITILIMFGL
ANTVAALAPNIWVMAIARLIPALGLPVFWALASETAVDIVGPDYAGRAIAKIGFGIVCATVFGIPVGTLISDAFGWRSAF
AILAVIAFAKALLLFVYLPKTSLHQHQVSFASQFKILRSPLMLGHVLLSILVFSGMFTAYTYLADILERLAGFNGTVVGW
CLMGFGAVGLIGNSLGGRAVDRHPLMASVMFCAFMIPGMVALVPNINSSLGLAAAMGIWGVTQAALFLVSHVRLMKAAPE
APAFAASLNIAGANLGIGLGAIIGGRVIDSAGLGFVGFAAAGFILLSIFLAMVLMVLKPRDACAPA
>Mature_386_residues
MLLPILLLSAAGFTVLTTEFVIVGLLPAIARDLAVTIPQAGLLVTLFAFTVAMFGPFLTAYFARFERRKLFITILIMFGL
ANTVAALAPNIWVMAIARLIPALGLPVFWALASETAVDIVGPDYAGRAIAKIGFGIVCATVFGIPVGTLISDAFGWRSAF
AILAVIAFAKALLLFVYLPKTSLHQHQVSFASQFKILRSPLMLGHVLLSILVFSGMFTAYTYLADILERLAGFNGTVVGW
CLMGFGAVGLIGNSLGGRAVDRHPLMASVMFCAFMIPGMVALVPNINSSLGLAAAMGIWGVTQAALFLVSHVRLMKAAPE
APAFAASLNIAGANLGIGLGAIIGGRVIDSAGLGFVGFAAAGFILLSIFLAMVLMVLKPRDACAPA

Specific function: Unknown

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1787947, Length=385, Percent_Identity=29.8701298701299, Blast_Score=145, Evalue=5e-36,
Organism=Escherichia coli, GI1787808, Length=363, Percent_Identity=28.3746556473829, Blast_Score=118, Evalue=8e-28,
Organism=Escherichia coli, GI145693198, Length=341, Percent_Identity=28.1524926686217, Blast_Score=99, Evalue=6e-22,
Organism=Escherichia coli, GI1786595, Length=267, Percent_Identity=25.0936329588015, Blast_Score=96, Evalue=4e-21,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 40436; Mature: 40436

Theoretical pI: Translated: 9.99; Mature: 9.99

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.9 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.9 %Met     (Mature Protein)
4.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLLPILLLSAAGFTVLTTEFVIVGLLPAIARDLAVTIPQAGLLVTLFAFTVAMFGPFLTA
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YFARFERRKLFITILIMFGLANTVAALAPNIWVMAIARLIPALGLPVFWALASETAVDIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEC
GPDYAGRAIAKIGFGIVCATVFGIPVGTLISDAFGWRSAFAILAVIAFAKALLLFVYLPK
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSLHQHQVSFASQFKILRSPLMLGHVLLSILVFSGMFTAYTYLADILERLAGFNGTVVGW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
CLMGFGAVGLIGNSLGGRAVDRHPLMASVMFCAFMIPGMVALVPNINSSLGLAAAMGIWG
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VTQAALFLVSHVRLMKAAPEAPAFAASLNIAGANLGIGLGAIIGGRVIDSAGLGFVGFAA
HHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHCHHHHCCCCCHHHHHH
AGFILLSIFLAMVLMVLKPRDACAPA
HHHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure
MLLPILLLSAAGFTVLTTEFVIVGLLPAIARDLAVTIPQAGLLVTLFAFTVAMFGPFLTA
CHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
YFARFERRKLFITILIMFGLANTVAALAPNIWVMAIARLIPALGLPVFWALASETAVDIV
HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCHHHHHHHHCCCEEEEC
GPDYAGRAIAKIGFGIVCATVFGIPVGTLISDAFGWRSAFAILAVIAFAKALLLFVYLPK
CCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
TSLHQHQVSFASQFKILRSPLMLGHVLLSILVFSGMFTAYTYLADILERLAGFNGTVVGW
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
CLMGFGAVGLIGNSLGGRAVDRHPLMASVMFCAFMIPGMVALVPNINSSLGLAAAMGIWG
HHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
VTQAALFLVSHVRLMKAAPEAPAFAASLNIAGANLGIGLGAIIGGRVIDSAGLGFVGFAA
HHHHHHHHHHHHHHHHCCCCCCCHHHHEEECCCCCCHHHHHHHHCHHHHCCCCCHHHHHH
AGFILLSIFLAMVLMVLKPRDACAPA
HHHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]