Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
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Accession | NC_007492 |
Length | 6,438,405 |
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The map label for this gene is clpP [H]
Identifier: 77459919
GI number: 77459919
Start: 4185768
End: 4186403
Strand: Reverse
Name: clpP [H]
Synonym: Pfl01_3697
Alternate gene names: 77459919
Gene position: 4186403-4185768 (Counterclockwise)
Preceding gene: 77459920
Following gene: 77459918
Centisome position: 65.02
GC content: 56.13
Gene sequence:
>636_bases ATGTTCCGTAATTCCTATATTCAGCAGAACTCTGATATCCAGGCCGCCGGCGGCCTGGTCCCGATGGTTGTCGAGCAATC TGCTCGTGGCGAGCGCGCCTATGACATCTACTCGCGTCTTCTTAAGGAACGAGTGATCTTTCTGGTGGGTCCTGTAGAGG ACTACATGGCCAACCTGATTTGCGCGCAATTGCTGTTCCTTGAAGCGGAAAACCCGGACAAGGACATCCATCTTTATATC AACTCCCCGGGCGGTTCGGTGACAGCGGGCATGTCGATCTACGACACCATGCAGTTCATCAAGCCAAACGTATCAACTAC CTGTATCGGTCAGGCGTGCAGCATGGGCGCGTTCCTGCTGACGGCCGGTGCACCTGGCAAGCGTTTCTGCCTGCCGAACT CGCGCGTGATGATTCACCAGCCGCTGGGCGGTTTCCAGGGGCAGGCGTCGGACATCGAAATCCATGCCAAGGAAATCCTC TTCATCCGCGAGCGTCTCAACACGCTGATGGCCAAGCACAGCGGCCGTACGCTTGAAGAAATCGAGCGCGACACCAACCG CGACAACTTCATGAGTGCAGAAGCTGCGAAGGAATACGGTCTGATCGACGAAGTGATCAACCAGCGCCCAGCTTAA
Upstream 100 bases:
>100_bases CCGACTGATTGTTTTTGCGTTAGAAGCACACACCATAAGCCAGCCTTCGAGCTGGCTTATGCGTATTCAAGACATGACTA TTTGGGAGTGACTGCAGAGC
Downstream 100 bases:
>100_bases AATAAGCAACTCAAAATAGGCTTGGTCGGCGCGTCTGATCAGCGGCGGGCTTGAAAAAGCCCGCAATAGCCTTCATCTTG TGTTGCAAGCCTATCGGATT
Product: ATP-dependent Clp protease proteolytic subunit
Products: NA
Alternate protein names: Endopeptidase Clp [H]
Number of amino acids: Translated: 211; Mature: 211
Protein sequence:
>211_residues MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL FIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVINQRPA
Sequences:
>Translated_211_residues MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL FIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVINQRPA >Mature_211_residues MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLICAQLLFLEAENPDKDIHLYI NSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLLTAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEIL FIRERLNTLMAKHSGRTLEEIERDTNRDNFMSAEAAKEYGLIDEVINQRPA
Specific function: Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins [H]
COG id: COG0740
COG function: function code OU; Protease subunit of ATP-dependent Clp proteases
Gene ontology:
Cell location: Cytoplasm [H]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the peptidase S14 family [H]
Homologues:
Organism=Homo sapiens, GI5174419, Length=192, Percent_Identity=55.7291666666667, Blast_Score=237, Evalue=5e-63, Organism=Escherichia coli, GI1786641, Length=205, Percent_Identity=72.1951219512195, Blast_Score=320, Evalue=6e-89, Organism=Caenorhabditis elegans, GI17538017, Length=186, Percent_Identity=54.3010752688172, Blast_Score=221, Evalue=1e-58, Organism=Drosophila melanogaster, GI20129427, Length=192, Percent_Identity=59.8958333333333, Blast_Score=253, Evalue=5e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR001907 - InterPro: IPR018215 [H]
Pfam domain/function: PF00574 CLP_protease [H]
EC number: =3.4.21.92 [H]
Molecular weight: Translated: 23450; Mature: 23450
Theoretical pI: Translated: 5.32; Mature: 5.32
Prosite motif: PS00381 CLP_PROTEASE_SER ; PS00382 CLP_PROTEASE_HIS
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.9 %Cys (Translated Protein) 4.3 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 1.9 %Cys (Mature Protein) 4.3 %Met (Mature Protein) 6.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLI CCCCCCCCCCCCCCCCCCEEHEEHHHCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHH CAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLL HHHHHHHCCCCCCCEEEEEEECCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHCCCEEEE TAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEE ECCCCCCEEECCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHH IERDTNRDNFMSAEAAKEYGLIDEVINQRPA HHHHCCCCHHHHHHHHHHCCHHHHHHHCCCC >Mature Secondary Structure MFRNSYIQQNSDIQAAGGLVPMVVEQSARGERAYDIYSRLLKERVIFLVGPVEDYMANLI CCCCCCCCCCCCCCCCCCEEHEEHHHCCCCCHHHHHHHHHHHHHHEEEECCHHHHHHHHH CAQLLFLEAENPDKDIHLYINSPGGSVTAGMSIYDTMQFIKPNVSTTCIGQACSMGAFLL HHHHHHHCCCCCCCEEEEEEECCCCCEEECHHHHHHHHHHCCCCCHHHHHHHHCCCEEEE TAGAPGKRFCLPNSRVMIHQPLGGFQGQASDIEIHAKEILFIRERLNTLMAKHSGRTLEE ECCCCCCEEECCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHCCCCHHHH IERDTNRDNFMSAEAAKEYGLIDEVINQRPA HHHHCCCCHHHHHHHHHHCCHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA