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The map label for this gene is rpoE [H]

Identifier: 77459888

GI number: 77459888

Start: 4149844

End: 4150350

Strand: Direct

Name: rpoE [H]

Synonym: Pfl01_3666

Alternate gene names: 77459888

Gene position: 4149844-4150350 (Clockwise)

Preceding gene: 77459885

Following gene: 77459889

Centisome position: 64.45

GC content: 61.74

Gene sequence:

>507_bases
ATGAGCGAATTCGACGAACAACTGCGAGAAATAATCCCCAGATTGCGGCGTTTTGCCGTGTCGTTGACTCGCAACAGCAG
CAGCGCCGACGATCTGGTACAGGCCAGTCTGGAGCGCGCGCTGTCGGGTTGGGGCGACAAACGCGCCGACGGCGATCTGC
GCGCCTGGTTGTTTTCGATCCTGTACCGGCAGTTTCTCGATGCGCATCGGCGTTCGCGGCGTTATGCGCGGATGCTCGAA
TTCTTCACCGGCCGTGATGACGCCGAGCCCTCGGTGGAACGCACCGTCATTGCCCAATCGACTTTGAAGGCCTTCGACCG
ACTGCCCACCGAACAGCGCGCCCTGCTGCTGATGGTGTCGGTGGAAGGCCTGACTTATAAGGAGGTCGCCGAGATTCTCG
ACGTCCCCACCGGCACCGTGATGTCGCGCCTGTCCCGTGCTCGCCAGGCCCTGCGCCAGCTCAGCGACGGGGAAATCAGC
AGCCCTTCCTTGCGGATACTCAAATGA

Upstream 100 bases:

>100_bases
GGGATTTATTCCACGGCCCGGTATTTATTTTTCAGAACGTGGAATAACCTCCAATGCCGGGCGTCTTCCTAGTCCACAGC
GTAGCGACTAGTACAACTTC

Downstream 100 bases:

>100_bases
TCAGTCTGCCCCCCAACGAACGTGACCTGCACGCCTACGTCGACCACCAGCTCAGCGAGGCCGACCGACATGTAATGGAA
ACCTGGCTCGCCAGCCATCC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: Sigma-24 [H]

Number of amino acids: Translated: 168; Mature: 167

Protein sequence:

>168_residues
MSEFDEQLREIIPRLRRFAVSLTRNSSSADDLVQASLERALSGWGDKRADGDLRAWLFSILYRQFLDAHRRSRRYARMLE
FFTGRDDAEPSVERTVIAQSTLKAFDRLPTEQRALLLMVSVEGLTYKEVAEILDVPTGTVMSRLSRARQALRQLSDGEIS
SPSLRILK

Sequences:

>Translated_168_residues
MSEFDEQLREIIPRLRRFAVSLTRNSSSADDLVQASLERALSGWGDKRADGDLRAWLFSILYRQFLDAHRRSRRYARMLE
FFTGRDDAEPSVERTVIAQSTLKAFDRLPTEQRALLLMVSVEGLTYKEVAEILDVPTGTVMSRLSRARQALRQLSDGEIS
SPSLRILK
>Mature_167_residues
SEFDEQLREIIPRLRRFAVSLTRNSSSADDLVQASLERALSGWGDKRADGDLRAWLFSILYRQFLDAHRRSRRYARMLEF
FTGRDDAEPSVERTVIAQSTLKAFDRLPTEQRALLLMVSVEGLTYKEVAEILDVPTGTVMSRLSRARQALRQLSDGEISS
PSLRILK

Specific function: Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is involved in heat shock and oxidative stress response; it is believed to control protein processing

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family. ECF subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: <10 [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR014293
- InterPro:   IPR000838
- InterPro:   IPR007627
- InterPro:   IPR013249
- InterPro:   IPR013325
- InterPro:   IPR013324 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF08281 Sigma70_r4_2 [H]

EC number: NA

Molecular weight: Translated: 19233; Mature: 19102

Theoretical pI: Translated: 10.03; Mature: 10.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSEFDEQLREIIPRLRRFAVSLTRNSSSADDLVQASLERALSGWGDKRADGDLRAWLFSI
CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LYRQFLDAHRRSRRYARMLEFFTGRDDAEPSVERTVIAQSTLKAFDRLPTEQRALLLMVS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHEEHHHH
VEGLTYKEVAEILDVPTGTVMSRLSRARQALRQLSDGEISSPSLRILK
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC
>Mature Secondary Structure 
SEFDEQLREIIPRLRRFAVSLTRNSSSADDLVQASLERALSGWGDKRADGDLRAWLFSI
CHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
LYRQFLDAHRRSRRYARMLEFFTGRDDAEPSVERTVIAQSTLKAFDRLPTEQRALLLMVS
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHEEHHHH
VEGLTYKEVAEILDVPTGTVMSRLSRARQALRQLSDGEISSPSLRILK
CCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12788972 [H]