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The map label for this gene is ymfK [C]

Identifier: 77459882

GI number: 77459882

Start: 4143931

End: 4144629

Strand: Reverse

Name: ymfK [C]

Synonym: Pfl01_3660

Alternate gene names: 77459882

Gene position: 4144629-4143931 (Counterclockwise)

Preceding gene: 77459886

Following gene: 77459877

Centisome position: 64.37

GC content: 58.8

Gene sequence:

>699_bases
ATGTGTTTTGTCGGCCGAAGGCGTCCACGTATGGTGCCGCACATGGATAAATGGATTGAGTTGGTCAAGGCCAAAATGAG
TGAACTCAACGTCACTCAAGTCGAGCTCGGCGAGCGTGTCGGCATGTCTCAGGGTGGCATCGGCCATTGGCTGAACAAGC
GTCGCGAGCCCGGAATCACGCAGATGAACCGCGTGCTGAAAGCGCTGGGCATGGAGTATCTCGAAGTCGCAGTGGTGATT
CGTGAACCGCAGATCGATGCGGATGACGAAATGCCTCTGGCGCAGAAGTACAACCCTTACTTTCGCTACCCGGTCAGCGA
GTGGAATGCGCCGATCGAGGCCCGTGAAAGCCAGCCAGCGTATTCGAGTGCCAAGGACAAGCGACGTTTCGAACTGACGG
ACTATCACGCCCGTGGCCCGGCGTTCTGGCTCACCGTGATGGGGAATGCGATGACCGCGCCCACTGGGCAGAGCATCGGC
GAGGGGATGATGATTCTGGTGGATCCGGCGCTGGAAGCCGAGCCCGGAAAATTGGTGATCGCCCAGTGGCCGGACAGCGA
CGAGGCCATTTTCCGCAAACTGATCGAAGAGGGCGGCCAGCGTTACCTGGCGCCGCTCAATCCGACCTGGCCGAAAGCCT
TGTTGACCGACGAGTGTCGAATTATCGGTGTCGTGGTTCAGGCAACCGCCAAATACTAG

Upstream 100 bases:

>100_bases
TGGGGATATTCATGGTGAAAGGTCACTCCTTGGTCGATTCAAATCCGTGACCCAAGAATAGTACCAATAGTATTTGTGAC
CAGAATTTAAATACTACAAT

Downstream 100 bases:

>100_bases
TCAGATCGATCCTCGCCAAGCGTAGGATCGATCCACCTTTCAAGCTTCTTCCAGTTCGACCAGTGCACTGCCTTCGCTGA
CCATTTCGCCTTCCTGGCAA

Product: putative prophage repressor

Products: NA

Alternate protein names: ORF-96 protein [H]

Number of amino acids: Translated: 232; Mature: 232

Protein sequence:

>232_residues
MCFVGRRRPRMVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLNKRREPGITQMNRVLKALGMEYLEVAVVI
REPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPAYSSAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIG
EGMMILVDPALEAEPGKLVIAQWPDSDEAIFRKLIEEGGQRYLAPLNPTWPKALLTDECRIIGVVVQATAKY

Sequences:

>Translated_232_residues
MCFVGRRRPRMVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLNKRREPGITQMNRVLKALGMEYLEVAVVI
REPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPAYSSAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIG
EGMMILVDPALEAEPGKLVIAQWPDSDEAIFRKLIEEGGQRYLAPLNPTWPKALLTDECRIIGVVVQATAKY
>Mature_232_residues
MCFVGRRRPRMVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLNKRREPGITQMNRVLKALGMEYLEVAVVI
REPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPAYSSAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIG
EGMMILVDPALEAEPGKLVIAQWPDSDEAIFRKLIEEGGQRYLAPLNPTWPKALLTDECRIIGVVVQATAKY

Specific function: May control the expression of the integrase and inhibit excision of the mobile element R391, and regulate the expression of other genes as well [H]

COG id: COG1974

COG function: function code KT; SOS-response transcriptional repressors (RecA-mediated autopeptidases)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982
- InterPro:   IPR019759
- InterPro:   IPR015927
- InterPro:   IPR011056 [H]

Pfam domain/function: PF01381 HTH_3; PF00717 Peptidase_S24 [H]

EC number: NA

Molecular weight: Translated: 26289; Mature: 26289

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
5.2 %Met     (Translated Protein)
6.0 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
5.2 %Met     (Mature Protein)
6.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MCFVGRRRPRMVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLNKRREPGIT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCHH
QMNRVLKALGMEYLEVAVVIREPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPA
HHHHHHHHHCHHHHHHEEEEECCCCCCCCCCCHHHHCCCEEECCHHHCCCCCCCCCCCCC
YSSAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIGEGMMILVDPALEAEPGKLVI
CCCHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEE
AQWPDSDEAIFRKLIEEGGQRYLAPLNPTWPKALLTDECRIIGVVVQATAKY
EECCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCEEEEEEEEEECCC
>Mature Secondary Structure
MCFVGRRRPRMVPHMDKWIELVKAKMSELNVTQVELGERVGMSQGGIGHWLNKRREPGIT
CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHCCCCCCHH
QMNRVLKALGMEYLEVAVVIREPQIDADDEMPLAQKYNPYFRYPVSEWNAPIEARESQPA
HHHHHHHHHCHHHHHHEEEEECCCCCCCCCCCHHHHCCCEEECCHHHCCCCCCCCCCCCC
YSSAKDKRRFELTDYHARGPAFWLTVMGNAMTAPTGQSIGEGMMILVDPALEAEPGKLVI
CCCHHHCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEE
AQWPDSDEAIFRKLIEEGGQRYLAPLNPTWPKALLTDECRIIGVVVQATAKY
EECCCCHHHHHHHHHHHCCCEEECCCCCCCCHHHHCCCCEEEEEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11157923; 12193633 [H]