| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77459823
Identifier: 77459823
GI number: 77459823
Start: 4069866
End: 4070618
Strand: Direct
Name: 77459823
Synonym: Pfl01_3601
Alternate gene names: NA
Gene position: 4069866-4070618 (Clockwise)
Preceding gene: 77459822
Following gene: 77459824
Centisome position: 63.21
GC content: 60.56
Gene sequence:
>753_bases ATGTCCCTACGCACCCTGCTCACCACCCTGCTGCTCGGCTGCAGTTTTTCGGTGATGGCAGCCACAGAAATCGTGCCCCT CAAGTACCACACCAGTGCCGACATGCTGCCGGTGGCTCAGGACTTCATCGGCAAGGACGGCCAGGTCAGCGCCTATGGCA ACCAACTGATCGTCAAGGCCGAGCCCGGCAAGATTCAAGAACTCAAGGACCTGCTCTCGCAACTCGACACCGCGCCCAAG CGCCTGCTGATCACAGTCGACACCAACGAAAACAACGGTCGTGGCGATGAAGGCTATTCGGTGAACGGCGCGCAAACCCG CATCATCAGTCGAAGCACTGCCAGCCGTGACGGCGGCATTCAGCAGATCCAGGCCAGCGAAGGTGCTCCGGCACTGATCC AGGTCGGCCAGAGCGTGCCGATCACCAGCAGCCAGACCAACTCCTACGGCGATTACAGCAGCCAGACGCAATATCGCAAC GTCACCCAGGGTTTTTACGTCACCGCCAGCGTCACCGGCGAAACCGTTCACCTGGCAATCAGTACCAACCGTGACCGCAT GAGCCAGGAACGTCCCGATGTAGTGAACGTACAAAGTACCGACACAACCGTCACCGGACGCTTGGGCGAGTGGATCACCC TCGCCGGCGTGAATCGCCAGACCCAGGCCGACAAACAGGGCCTGGCCCGCAGCTACTCGACTCAGGGCCGGGATGACATG ACGTTGCGGGTGAAAGTCGACACGCTGGACTAA
Upstream 100 bases:
>100_bases CTCACGATGCCGGGGCGTTTTGCTGTCTACGATTCAACTTGCCCCACCCCGGGCCGACAAACTGGCAATATCAAGCCTTT CGAAAGCGGAGATAACGGAC
Downstream 100 bases:
>100_bases AGCACCGAAAACTGACTGATTAGTCGTATTAGACGAAAGATGTAGTGCTTGAAAAAAAGCACTACAAAACGTTTGACGAG CCAAAAAAGCGAAGGCATGA
Product: NolW-like protein
Products: NA
Alternate protein names: Type II And III Secretion System Family Protein; NolW-Like; NolW Domain-Containing Protein; Secretion System Protein; NolW-Like Protein; Bacterial Type II/III Secretion System Short Domain Protein; Type II And III Secretion System Protein
Number of amino acids: Translated: 250; Mature: 249
Protein sequence:
>250_residues MSLRTLLTTLLLGCSFSVMAATEIVPLKYHTSADMLPVAQDFIGKDGQVSAYGNQLIVKAEPGKIQELKDLLSQLDTAPK RLLITVDTNENNGRGDEGYSVNGAQTRIISRSTASRDGGIQQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRN VTQGFYVTASVTGETVHLAISTNRDRMSQERPDVVNVQSTDTTVTGRLGEWITLAGVNRQTQADKQGLARSYSTQGRDDM TLRVKVDTLD
Sequences:
>Translated_250_residues MSLRTLLTTLLLGCSFSVMAATEIVPLKYHTSADMLPVAQDFIGKDGQVSAYGNQLIVKAEPGKIQELKDLLSQLDTAPK RLLITVDTNENNGRGDEGYSVNGAQTRIISRSTASRDGGIQQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRN VTQGFYVTASVTGETVHLAISTNRDRMSQERPDVVNVQSTDTTVTGRLGEWITLAGVNRQTQADKQGLARSYSTQGRDDM TLRVKVDTLD >Mature_249_residues SLRTLLTTLLLGCSFSVMAATEIVPLKYHTSADMLPVAQDFIGKDGQVSAYGNQLIVKAEPGKIQELKDLLSQLDTAPKR LLITVDTNENNGRGDEGYSVNGAQTRIISRSTASRDGGIQQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRNV TQGFYVTASVTGETVHLAISTNRDRMSQERPDVVNVQSTDTTVTGRLGEWITLAGVNRQTQADKQGLARSYSTQGRDDMT LRVKVDTLD
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 27066; Mature: 26934
Theoretical pI: Translated: 5.33; Mature: 5.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.0 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 1.6 %Met (Mature Protein) 2.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSLRTLLTTLLLGCSFSVMAATEIVPLKYHTSADMLPVAQDFIGKDGQVSAYGNQLIVKA CCHHHHHHHHHHHCCCEEEEHEEEEEEEECCCCCCCHHHHHHCCCCCEEEECCCEEEEEE EPGKIQELKDLLSQLDTAPKRLLITVDTNENNGRGDEGYSVNGAQTRIISRSTASRDGGI CCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEECCHHEEEEECCCCCCCCCC QQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRNVTQGFYVTASVTGETVHLAI EEEECCCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEECCCEEEEEE STNRDRMSQERPDVVNVQSTDTTVTGRLGEWITLAGVNRQTQADKQGLARSYSTQGRDDM ECCHHHHHHCCCCEEEEECCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCE TLRVKVDTLD EEEEEEEECC >Mature Secondary Structure SLRTLLTTLLLGCSFSVMAATEIVPLKYHTSADMLPVAQDFIGKDGQVSAYGNQLIVKA CHHHHHHHHHHHCCCEEEEHEEEEEEEECCCCCCCHHHHHHCCCCCEEEECCCEEEEEE EPGKIQELKDLLSQLDTAPKRLLITVDTNENNGRGDEGYSVNGAQTRIISRSTASRDGGI CCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCEEECCHHEEEEECCCCCCCCCC QQIQASEGAPALIQVGQSVPITSSQTNSYGDYSSQTQYRNVTQGFYVTASVTGETVHLAI EEEECCCCCCHHEECCCCCCCCCCCCCCCCCCCCCHHHHCCCCCEEEEEEECCCEEEEEE STNRDRMSQERPDVVNVQSTDTTVTGRLGEWITLAGVNRQTQADKQGLARSYSTQGRDDM ECCHHHHHHCCCCEEEEECCCCEEECCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCE TLRVKVDTLD EEEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA