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The map label for this gene is ycjD [C]

Identifier: 77459747

GI number: 77459747

Start: 4004259

End: 4004630

Strand: Direct

Name: ycjD [C]

Synonym: Pfl01_3525

Alternate gene names: 77459747

Gene position: 4004259-4004630 (Clockwise)

Preceding gene: 77459746

Following gene: 77459749

Centisome position: 62.19

GC content: 58.87

Gene sequence:

>372_bases
ATGCAAAATCGCCCTACCCTCGACCAACGCCGATTCGCCCGCCACTTACGCGCCAGCCAGACCGATTGTGAGCAACTGCT
CTGGCAGAAGCTGCGGGCGCGGCAGGTGGCAGGGCTGAAATTTCGGCGGCAGGTGCCGGTTCCGCCATTCGTGCTGGATT
TCTACTGTGTGGAATTGAAGCTGGCGGTAGAGCTGGATGGGGGGCAGCACTTTGAGGAGGCGGGAGAAATTCATGACCGG
CGGCGTACGGCTTATCTTCAGCGACTGGGGATTGAGGTGGTGCGGTTTAGCAATCTGGAGGTGATTCAGCAGATGAGTGA
CGTGCTGGAGCAGATTGTGCGGGTTGCGGAGGTTTTGAGAGCGCAATCCTGA

Upstream 100 bases:

>100_bases
CTGAAAAATCTGGTGTGAATCCATAACCAGGTTGATCCGGCACTGAGAGTTGGTCTGGTCTACAGTGAATTTTCCATTCC
ACTTCACAAGGACGTGAAGC

Downstream 100 bases:

>100_bases
TCCGAAAAGCGCCCTCACCCCAGCCCTCTCCCGGAGGGAGAGGGAGCCGATTGGGGGATATTGTCGGAATACATCGACCT
GAAAAATCTGCGGTGAATCC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MQNRPTLDQRRFARHLRASQTDCEQLLWQKLRARQVAGLKFRRQVPVPPFVLDFYCVELKLAVELDGGQHFEEAGEIHDR
RRTAYLQRLGIEVVRFSNLEVIQQMSDVLEQIVRVAEVLRAQS

Sequences:

>Translated_123_residues
MQNRPTLDQRRFARHLRASQTDCEQLLWQKLRARQVAGLKFRRQVPVPPFVLDFYCVELKLAVELDGGQHFEEAGEIHDR
RRTAYLQRLGIEVVRFSNLEVIQQMSDVLEQIVRVAEVLRAQS
>Mature_123_residues
MQNRPTLDQRRFARHLRASQTDCEQLLWQKLRARQVAGLKFRRQVPVPPFVLDFYCVELKLAVELDGGQHFEEAGEIHDR
RRTAYLQRLGIEVVRFSNLEVIQQMSDVLEQIVRVAEVLRAQS

Specific function: Unknown

COG id: COG2852

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To E.coli ycjD and H.influenzae HI_1162 [H]

Homologues:

Organism=Escherichia coli, GI1787546, Length=101, Percent_Identity=44.5544554455446, Blast_Score=84, Evalue=2e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007569
- InterPro:   IPR011335 [H]

Pfam domain/function: PF04480 DUF559 [H]

EC number: NA

Molecular weight: Translated: 14457; Mature: 14457

Theoretical pI: Translated: 9.34; Mature: 9.34

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQNRPTLDQRRFARHLRASQTDCEQLLWQKLRARQVAGLKFRRQVPVPPFVLDFYCVELK
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHE
LAVELDGGQHFEEAGEIHDRRRTAYLQRLGIEVVRFSNLEVIQQMSDVLEQIVRVAEVLR
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AQS
CCC
>Mature Secondary Structure
MQNRPTLDQRRFARHLRASQTDCEQLLWQKLRARQVAGLKFRRQVPVPPFVLDFYCVELK
CCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHE
LAVELDGGQHFEEAGEIHDRRRTAYLQRLGIEVVRFSNLEVIQQMSDVLEQIVRVAEVLR
EEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
AQS
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]