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The map label for this gene is slyB [H]

Identifier: 77457458

GI number: 77457458

Start: 1403197

End: 1403661

Strand: Direct

Name: slyB [H]

Synonym: Pfl01_1231

Alternate gene names: 77457458

Gene position: 1403197-1403661 (Clockwise)

Preceding gene: 77457456

Following gene: 77457462

Centisome position: 21.79

GC content: 62.37

Gene sequence:

>465_bases
ATGCGTAAGTCTGTTCTGCTGGTTGCTTCCTTTTCCACGATGGCGATGTTGCTGACCGGCTGCCAGTCGAGCCTGACCGG
TGACTCCTACTCCCGTGACGAAGCGCGTCGCGTGCAGACGATTCGCATGGGCACCATCGAATCCCTGCGTCCGGTGAAAA
TCGAAGGCACCAAGACCCCGATCGGCGGCGCTGCCGGTGCAGTGGTTGGCGGCGTCGGTGGCAGCGCGATCGGCGGCGGC
AAAGGCAGCATCGTTGCAGCCGTTATCGGTGCCGTGGCTGGCGGCCTGATCGGTTCGGCCACTGAAGAAGGCCTGACTCG
CACTCAGGGTGTTGAAATCACCGTGCGCGAAGACGACGGCAGCATGCGCGCCTATGTGCAGCAAGTGCAGGAGAATGAAG
TGTTCCGTGTGGGTGAGCGGGTACGGATTTCCACCGTTGGCGGGACCAGCCGCGTTTCGCACTAA

Upstream 100 bases:

>100_bases
CCTGTACCGGGCCTGAATGAAAGCAACTTAATCCGGGCGACGCCGTGACAGGCGTCAAGCTGCGGAGTTTAATGAATACC
TGTCCTTTGGAGTTGATGCT

Downstream 100 bases:

>100_bases
TCGCGAACGCGCGGTAAAGGAAAACCCCGATCAGGTGACTGGTCGGGGTTTTTTTATTGGTTGTTTACGAGCCCGCCCGA
GTGCCAATGAAATATTCCAG

Product: surface antigen protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 154; Mature: 154

Protein sequence:

>154_residues
MRKSVLLVASFSTMAMLLTGCQSSLTGDSYSRDEARRVQTIRMGTIESLRPVKIEGTKTPIGGAAGAVVGGVGGSAIGGG
KGSIVAAVIGAVAGGLIGSATEEGLTRTQGVEITVREDDGSMRAYVQQVQENEVFRVGERVRISTVGGTSRVSH

Sequences:

>Translated_154_residues
MRKSVLLVASFSTMAMLLTGCQSSLTGDSYSRDEARRVQTIRMGTIESLRPVKIEGTKTPIGGAAGAVVGGVGGSAIGGG
KGSIVAAVIGAVAGGLIGSATEEGLTRTQGVEITVREDDGSMRAYVQQVQENEVFRVGERVRISTVGGTSRVSH
>Mature_154_residues
MRKSVLLVASFSTMAMLLTGCQSSLTGDSYSRDEARRVQTIRMGTIESLRPVKIEGTKTPIGGAAGAVVGGVGGSAIGGG
KGSIVAAVIGAVAGGLIGSATEEGLTRTQGVEITVREDDGSMRAYVQQVQENEVFRVGERVRISTVGGTSRVSH

Specific function: Unknown

COG id: COG3133

COG function: function code M; Outer membrane lipoprotein

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the pcp/slyB lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI48994887, Length=157, Percent_Identity=41.4012738853503, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008816 [H]

Pfam domain/function: PF05433 Rick_17kDa_Anti [H]

EC number: NA

Molecular weight: Translated: 15798; Mature: 15798

Theoretical pI: Translated: 9.82; Mature: 9.82

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
3.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRKSVLLVASFSTMAMLLTGCQSSLTGDSYSRDEARRVQTIRMGTIESLRPVKIEGTKTP
CCCCEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCC
IGGAAGAVVGGVGGSAIGGGKGSIVAAVIGAVAGGLIGSATEEGLTRTQGVEITVREDDG
CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCHHCCCEEEEEEECCC
SMRAYVQQVQENEVFRVGERVRISTVGGTSRVSH
HHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCC
>Mature Secondary Structure
MRKSVLLVASFSTMAMLLTGCQSSLTGDSYSRDEARRVQTIRMGTIESLRPVKIEGTKTP
CCCCEEEEECHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCCCCCCCEEEECCCCC
IGGAAGAVVGGVGGSAIGGGKGSIVAAVIGAVAGGLIGSATEEGLTRTQGVEITVREDDG
CCCCCCCEEECCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHCCHHCCCEEEEEEECCC
SMRAYVQQVQENEVFRVGERVRISTVGGTSRVSH
HHHHHHHHHHHCCCEECCCEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]