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The map label for this gene is cspA [H]

Identifier: 77457312

GI number: 77457312

Start: 1256675

End: 1256884

Strand: Direct

Name: cspA [H]

Synonym: Pfl01_1085

Alternate gene names: 77457312

Gene position: 1256675-1256884 (Clockwise)

Preceding gene: 77457308

Following gene: 77457317

Centisome position: 19.52

GC content: 58.1

Gene sequence:

>210_bases
ATGGCAACACGTGAAACCGGCAACGTGAAGTGGTTCAACGACGCCAAGGGCTACGGCTTCATTCAGCGTGAAGACGGGGT
GGATGTGTTCGTGCACTACCGTGCGATTCGCGGCGAAGGCCACCGTTCGCTGACCGAGGGTCAGCAGGTTGAATACGCGG
TGGTGGAAGGGCAGAAGGGGTTGCAGGCTGAAGACGTTGTAGGTCTGTAA

Upstream 100 bases:

>100_bases
TGTCGCCGGGGCCCTTTTATGGACGTCGGACGCAGGCTGACGTTCCGCAAAGGCTTTCCTGCGAAAAGCCTGTTCAATAA
TAAAAAAGGAGTATGAACAG

Downstream 100 bases:

>100_bases
GCCAACTTCGAGCTGATCGTTCCCACGCGCAGCGTGGGAACGATCAAGCGATCAGCGTCAGGCAGTTTTCCAGGTGATCT
CTTCTTCACCATCGGCGCTG

Product: cold-shock DNA-binding protein family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 69; Mature: 68

Protein sequence:

>69_residues
MATRETGNVKWFNDAKGYGFIQREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKGLQAEDVVGL

Sequences:

>Translated_69_residues
MATRETGNVKWFNDAKGYGFIQREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKGLQAEDVVGL
>Mature_68_residues
ATRETGNVKWFNDAKGYGFIQREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKGLQAEDVVGL

Specific function: Unknown

COG id: COG1278

COG function: function code K; Cold shock proteins

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 CSD (cold-shock) domain [H]

Homologues:

Organism=Homo sapiens, GI224586884, Length=73, Percent_Identity=49.3150684931507, Blast_Score=65, Evalue=2e-11,
Organism=Homo sapiens, GI224586882, Length=73, Percent_Identity=49.3150684931507, Blast_Score=64, Evalue=2e-11,
Organism=Homo sapiens, GI34098946, Length=74, Percent_Identity=48.6486486486487, Blast_Score=63, Evalue=4e-11,
Organism=Escherichia coli, GI1786841, Length=68, Percent_Identity=51.4705882352941, Blast_Score=79, Evalue=7e-17,
Organism=Escherichia coli, GI2367114, Length=70, Percent_Identity=50, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1788126, Length=64, Percent_Identity=53.125, Blast_Score=74, Evalue=2e-15,
Organism=Escherichia coli, GI1789979, Length=70, Percent_Identity=50, Blast_Score=74, Evalue=3e-15,
Organism=Escherichia coli, GI1787834, Length=70, Percent_Identity=50, Blast_Score=73, Evalue=4e-15,
Organism=Escherichia coli, GI1787839, Length=68, Percent_Identity=48.5294117647059, Blast_Score=72, Evalue=1e-14,
Organism=Escherichia coli, GI1787107, Length=66, Percent_Identity=48.4848484848485, Blast_Score=65, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019844
- InterPro:   IPR012156
- InterPro:   IPR011129
- InterPro:   IPR002059
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF00313 CSD [H]

EC number: NA

Molecular weight: Translated: 7714; Mature: 7582

Theoretical pI: Translated: 5.02; Mature: 5.02

Prosite motif: PS00352 COLD_SHOCK

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
0.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATRETGNVKWFNDAKGYGFIQREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG
CCCCCCCCEEEECCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCC
LQAEDVVGL
CCCCCCCCC
>Mature Secondary Structure 
ATRETGNVKWFNDAKGYGFIQREDGVDVFVHYRAIRGEGHRSLTEGQQVEYAVVEGQKG
CCCCCCCEEEECCCCCCEEEEECCCCEEEEEEEEECCCCCCCCCCCCEEEEEEECCCCC
LQAEDVVGL
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10984043 [H]