| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77457189
Identifier: 77457189
GI number: 77457189
Start: 1122574
End: 1123788
Strand: Direct
Name: 77457189
Synonym: Pfl01_0962
Alternate gene names: NA
Gene position: 1122574-1123788 (Clockwise)
Preceding gene: 77457175
Following gene: 77457190
Centisome position: 17.44
GC content: 62.14
Gene sequence:
>1215_bases ATGACTCCAGCTATCGCGTCCATAGGTGATCGGCGGTTTTCCAGCCGGATCGGCTATAGTGCGGCGCGGGTTTTGTTATG GAGACACCCTTTGCGCATTGTTCTTTTCTTCACCGCGTGGCTGTTGAGCGTCGGTGCCGTAGCGGCGCCGGGCGATATCG CGACGCTGGATCGCAGCACCTGGCCGGAAAAACTCGACAATCCGACCCTGTTCGACGTCGCCTCGCGGGCGGAAATCCTG ATGTTCGCCCGCGGCCTGCTCGGTACCGAAGCGCTGGACGAAGCGGCGCTGGCCCAGCGTCTGGGGCTGCGCACGGTGAA TCTGGACGCGATCAACAGTCTGCGCGAGCGGCTGTGGCAGCGGCTGCTGGCCAACTACAACTTTGCCCAGCAAAGCTGCG ATCAGGACGCCTCGTTCTGCTTCCTTGTCGAGGACCTGCCGACCCTGCGCGAGCAGGCTGCCAAATTCGTGGTCAGCGAC GAAAGCTATTACACCAGATGGGCTGAACCGAGCCGGATCTTCCACCTGCAATACCTTGATGAGCTGATGCGCAAGGCTGC GCTGTCGCCGCAGACCAGCAGCGAACTCGATCATTTCGGAGACTACGAGCGCAACGGCGACGACATGCACGATCGCTTGT TTCTGCTGAGTTTCGACAGCGCCGCCAACCTGCAACCGGACAACACCGACTGGCTCGCCGAGTACCTGCGCAAGTCGAAC CTGAGCGGCACCTTTTTCATGCTGGGCAAGGATGTTCAGGCGCGGCTGGCCGAACGTTCCGTCAGCAGTCTGCAAGCGGC GTTTTCGCAGCAGTGCGTCGGCGTGCAGGGCTGGGAGTTCCGCTCCCACAGCCACTGGCAGGACTGGCAGGATTCGGTGC GGCGCAGTGCCGATCTGGTCCGCAACAAGCTGCCGGAAAACTACGTGCCGCTGTTCCGTCCGCCGGAAGGGCAACGTCGC AGCGATGCCCGTAGTTTCTTCAACAGTCAGGGCCTGCAAGTGGCGCTGTGGGACATCGATGCCCAGGACGGCGCCGGCAA GCTCAAGGGCGCTCCGAGCGCGCAGCGGGTGCTGACCCTGATGCTGTTGTGGCGGCACGGGGTGATCAATTTCAACATGA AACAGGATGCGGTGAAGACCGCGTTGCCGTGGCTGATCACGCAAACCGCGCAAAGCGGCATCGGCTGGGAAGACTGTCAG GACGCATTTCGCTGA
Upstream 100 bases:
>100_bases CCGGCGGTGTTTCGTAATCGAGGGTTTTGGCGGGGGAAATCACCATCAGCATGAAGTCGTCTCCTTTAATCGTGGGGGCG ATTCTAGGGGGTTGGGGCGG
Downstream 100 bases:
>100_bases AAAACGGCAAGAGCCCGGAAACATTGGGCTTGGGGTGATTTTTTTGCAGAATTTGATGCAGGCGGACTTCCGACTCTAAC GGGGGCAGGGCGGTCCGCCA
Product: polysaccharide deacetylase
Products: NA
Alternate protein names: Polysaccharide Deacetylase
Number of amino acids: Translated: 404; Mature: 403
Protein sequence:
>404_residues MTPAIASIGDRRFSSRIGYSAARVLLWRHPLRIVLFFTAWLLSVGAVAAPGDIATLDRSTWPEKLDNPTLFDVASRAEIL MFARGLLGTEALDEAALAQRLGLRTVNLDAINSLRERLWQRLLANYNFAQQSCDQDASFCFLVEDLPTLREQAAKFVVSD ESYYTRWAEPSRIFHLQYLDELMRKAALSPQTSSELDHFGDYERNGDDMHDRLFLLSFDSAANLQPDNTDWLAEYLRKSN LSGTFFMLGKDVQARLAERSVSSLQAAFSQQCVGVQGWEFRSHSHWQDWQDSVRRSADLVRNKLPENYVPLFRPPEGQRR SDARSFFNSQGLQVALWDIDAQDGAGKLKGAPSAQRVLTLMLLWRHGVINFNMKQDAVKTALPWLITQTAQSGIGWEDCQ DAFR
Sequences:
>Translated_404_residues MTPAIASIGDRRFSSRIGYSAARVLLWRHPLRIVLFFTAWLLSVGAVAAPGDIATLDRSTWPEKLDNPTLFDVASRAEIL MFARGLLGTEALDEAALAQRLGLRTVNLDAINSLRERLWQRLLANYNFAQQSCDQDASFCFLVEDLPTLREQAAKFVVSD ESYYTRWAEPSRIFHLQYLDELMRKAALSPQTSSELDHFGDYERNGDDMHDRLFLLSFDSAANLQPDNTDWLAEYLRKSN LSGTFFMLGKDVQARLAERSVSSLQAAFSQQCVGVQGWEFRSHSHWQDWQDSVRRSADLVRNKLPENYVPLFRPPEGQRR SDARSFFNSQGLQVALWDIDAQDGAGKLKGAPSAQRVLTLMLLWRHGVINFNMKQDAVKTALPWLITQTAQSGIGWEDCQ DAFR >Mature_403_residues TPAIASIGDRRFSSRIGYSAARVLLWRHPLRIVLFFTAWLLSVGAVAAPGDIATLDRSTWPEKLDNPTLFDVASRAEILM FARGLLGTEALDEAALAQRLGLRTVNLDAINSLRERLWQRLLANYNFAQQSCDQDASFCFLVEDLPTLREQAAKFVVSDE SYYTRWAEPSRIFHLQYLDELMRKAALSPQTSSELDHFGDYERNGDDMHDRLFLLSFDSAANLQPDNTDWLAEYLRKSNL SGTFFMLGKDVQARLAERSVSSLQAAFSQQCVGVQGWEFRSHSHWQDWQDSVRRSADLVRNKLPENYVPLFRPPEGQRRS DARSFFNSQGLQVALWDIDAQDGAGKLKGAPSAQRVLTLMLLWRHGVINFNMKQDAVKTALPWLITQTAQSGIGWEDCQD AFR
Specific function: Unknown
COG id: COG0726
COG function: function code G; Predicted xylanase/chitin deacetylase
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 45872; Mature: 45741
Theoretical pI: Translated: 6.19; Mature: 6.19
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTPAIASIGDRRFSSRIGYSAARVLLWRHPLRIVLFFTAWLLSVGAVAAPGDIATLDRST CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCC WPEKLDNPTLFDVASRAEILMFARGLLGTEALDEAALAQRLGLRTVNLDAINSLRERLWQ CHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH RLLANYNFAQQSCDQDASFCFLVEDLPTLREQAAKFVVSDESYYTRWAEPSRIFHLQYLD HHHHCCCHHHHHCCCCCCEEEEHHHHHHHHHHHHHHEECCCHHHHCCCCCHHEEEHHHHH ELMRKAALSPQTSSELDHFGDYERNGDDMHDRLFLLSFDSAANLQPDNTDWLAEYLRKSN HHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHCC LSGTFFMLGKDVQARLAERSVSSLQAAFSQQCVGVQGWEFRSHSHWQDWQDSVRRSADLV CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH RNKLPENYVPLFRPPEGQRRSDARSFFNSQGLQVALWDIDAQDGAGKLKGAPSAQRVLTL HHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH MLLWRHGVINFNMKQDAVKTALPWLITQTAQSGIGWEDCQDAFR HHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC >Mature Secondary Structure TPAIASIGDRRFSSRIGYSAARVLLWRHPLRIVLFFTAWLLSVGAVAAPGDIATLDRST CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHCCCCC WPEKLDNPTLFDVASRAEILMFARGLLGTEALDEAALAQRLGLRTVNLDAINSLRERLWQ CHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCEECHHHHHHHHHHHHH RLLANYNFAQQSCDQDASFCFLVEDLPTLREQAAKFVVSDESYYTRWAEPSRIFHLQYLD HHHHCCCHHHHHCCCCCCEEEEHHHHHHHHHHHHHHEECCCHHHHCCCCCHHEEEHHHHH ELMRKAALSPQTSSELDHFGDYERNGDDMHDRLFLLSFDSAANLQPDNTDWLAEYLRKSN HHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHEEEEEEECCCCCCCCCCHHHHHHHHHHCC LSGTFFMLGKDVQARLAERSVSSLQAAFSQQCVGVQGWEFRSHSHWQDWQDSVRRSADLV CCCEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHH RNKLPENYVPLFRPPEGQRRSDARSFFNSQGLQVALWDIDAQDGAGKLKGAPSAQRVLTL HHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHH MLLWRHGVINFNMKQDAVKTALPWLITQTAQSGIGWEDCQDAFR HHHHHCCCEECCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA