| Definition | Pseudomonas fluorescens Pf0-1 chromosome, complete genome. |
|---|---|
| Accession | NC_007492 |
| Length | 6,438,405 |
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The map label for this gene is 77457175
Identifier: 77457175
GI number: 77457175
Start: 1101675
End: 1104503
Strand: Direct
Name: 77457175
Synonym: Pfl01_0948
Alternate gene names: NA
Gene position: 1101675-1104503 (Clockwise)
Preceding gene: 77457174
Following gene: 77457189
Centisome position: 17.11
GC content: 59.14
Gene sequence:
>2829_bases ATGAGTGTGCACATCAATACGCCGAGGATGTCTGTGTTCGACCCGCGCGGCTTGCCGGTGCGCACGGTCGACTATTGCCG AGACATCGAGGACGGACCGGTCGAGTCCCGGATCAACCGCACCCTGCATGACGCTGCCGGGCGTGCGATGAAACAGTGGG ACCCGCGACTTTGGCTGTCGCAGGCCGACGACCGGCTGACGCCGGCCAATCTGACGCAGGTGTTTGCTCTGGACGCCACG GTGATTCGCTCGGACAGCGTCGATGCCGGTACGCAAATCGAACTGAAGGGACTCGCTGCACAAACGCTGTTCAGTTGGGA CAGCCGTCAGACGCGGCGCGAGATCGAGCACGACAATTTGCTGCGCCCCGTGGCGATATTCGAAGAAGGAACAGGCGTGC CTCGGCGTTGTGTCGAGCGCCTGACCTACGGTCATCCCGGCAGCGGGGATCAGTCGCGAAACCAGTTCGGGCAGCTGATT CGTCATGATCATCCGGCGGGCAGCGTGCTGTTCACCGCGTTTGCAATCATCGGCGCATGCACCGAAGACACCCGCCACTT CACGCTGGAACTGCTGGCACCTGACTGGCCGGAGCGGGAGGCGGATCGTCTTCGGCTGCTGGAGCCTGGTGTTGGTGCGA CATCGCGGTGGCGCCATGGTGCGCTGGGGGATGTACTGCAACAGACGGATGCCCGGGACAACCGGCATACGTTCGAGCTG ACCGTTGATGGCCGTTTGCGCGAGCGCCGTTTGCAGTTGAAGGATGAGCCTGAGCAAACCCTGGTCACTGACATCCGCTA CAACGCGCAAGGCAGTGTCACGCGGGAAACCGCCGGCAACGGTGTGCAAACCACCCGGACGTACCGCCCTGAAGACGGTC GCCTGCTGGACCGCCGAACCGAAGATGCTGACGGTGGAGTGCTGCAACATCTGATGTATGGATACGACAGCACGGGCAAT GTCCTGAGTATCGAAGACAGGGCATTGCCGACCCGTTATTTCGCCAATCAGCGCATCGAGCCGGTCAGTCGCTTTTTCTA CGACAGTCTTTACCGATTGACCAAGGCTTGCGGCTGGGAAGCCGGCACTGCCAGTCAGGGCCCGCAATCCATGGGGCGAG TCGATCCTGCGGCGATCAGCAACTATCAGCAGACTTACAAATATGACGCCGACGGCAATCTGTGCGAATTGATTCACCTT GGCCCACAAGATCATGGGCGCAAACTGCGACCGGCGAGCTACAGCAACCGCAGTCTGCCATACAAAGTCACGCCGCCTAC CGATGCACAAATCGAAGCTGCATACGATCGAAGAGGCAACTTGCTGCAGCTGGAACCGGGGTGGTTGTTGAGCTGGAACC TGCGTAATCAACTGCAATCGGTCAGCCCGGTGGAGCGTGTTTCCGGTATCAATGACAGCGAGACCTATCTCTACGATGGC AGCAGTCAGCGGGTACGCAAGATCCGCTCCTTGTTAACCAATGCCCGGACCCTGGTTGCCGATGTGCGCTATTTGCCTGG ACTGGAGTTGCGCACCGACAACGGCACCGGCGAACGGTTGCAGGTCATCACGGCCGACGGTATTCGGGTACTGCGTTGGG AAAGCCCACCGCCCTGGGGAGTCAACATTCAATATCGATACCAGCATGTCGATCACCTGGGCTCGGTCAGTCTGGAAACC GCCGATGACGGTGCGATGATCAGCCGGGAAACGTTTCACCCTTTCGGTACCAGTGCCTGGCAGGACGGCGAATTCAGCTA CAAATACATCCGTTACTCAGGCAAGGAGCGTGATGCGACCGGGCTTGACTACTTTGATCTGCGTTACTACATCCCGTGGT TGCAGCATTGGTTGAATCCGGACCCTAAAGGCATGATCGATGGGCTCAATCTGTACTGTATGGTCGCCAATTCACCGGTC ACATTTTTCGACAGCGACGGTGGAGGCAAAACCGAAGCCGCTGAATTGAACAATAGCGTGGACAAACAGCAGGCCTTGTT GTCAGCAGTCTCATCGGCCGCTGCGAACACCCGCAACTCCATCATGAATCACCTGTATGCCCGTCAACGTTTTCAGGCAC TGGGCAGGCGCATCATCACGCAGTTGGGCAGTTCCGCATTCAGCGCCGGCGCCAGCGCGGCAGGCTCCGCAGCTGGGGGC GGCATTGGCGGGTTGTTGGGTCCGGGTGGTGCGAAATTGGGTGCCGCTGCCGGGGAAAAGGCTGCGTCAATGGCAGCAGA CCGCCTTGTGTCTAAAGTGGTGGACGCCTATCAACTGGATCGCGCGATCAATTTCAAAGGCAATGAAATGAATCCCAAGG CTTTCATCGAAAGCGTCGAGCCGAAAAAGAGGCCGGGCCTGGCAACGCTGGGATTCGAGCTCGCGGCATCGGATCCTCGT ACACCCGAAGGACGCGCCCGACTTGCGAGAGTGGTGGTCGATAAAGCCATTGACAAGGTGGGTGGCAAGCTGGGCTCGGA GGCGCCGGGCTTTATAAGAACGGGGATTGAGTTCTACCATGCCTCGCAAGGATTGGATGCAGAGACACTGAGTGAAGCCC ACGAACATACGCTAGCGGTGATCGACATGCTGGAATTCAGAACACAGGCGATCAAGGACGAAGTGGCGGTATCCGATGAT GCAACGGCGGAGGTCTTCGAAAAGGTTTCCGAGCTGTCGGCGCAAACTCCGGTCGTTGTTCAGGCGCTGAACAGGAATCA GGACTTCATCGCGCTGGTTGCGCCGACGCCCTATGCCGGCAAACGGCACTCGCTCAAACGAGGGGCGGGAGCGAAGTCTT CCCCTTCCAGGCAGCAGTCGTTTGGCTGA
Upstream 100 bases:
>100_bases CCGTTGGTCGGGACTGTAATTTCTGACAGTAGCCGCACGAGCGCCGCGCATGCTCCGCTACCCGAGGCAAGAAATGCCGG TCGCGCGGGGAACGGGCTCC
Downstream 100 bases:
>100_bases AGTAAAAAAAGCCCCCGCCCAACCCGCTGCGGATAGGGGACACAGCGGGCTGGACGGGGGCTTCTTGTTTTACGGAACGC TTACTGCGCGATGGTTTTCA
Product: insecticidal toxin protein
Products: NA
Alternate protein names: Insecticidal xin Protein; Insecticidal xin Complex; Insecticidal xin Complex Protein; C Component Of Insecticidal xin Complex; YD Repeat Protein; Rhs Family Protein-Like Protein; Insecticidal xin; Zinc Finger C2H2-Type Domain-Containing Protein; Rhs Family Protein; FG-GAP Repeat Protein; Insecticidal xin SepC/Tcc Class; Insecticidal xin SepC/TccC; Insecticial xin; Insecticidal xin Complex Protein TcaC; Insecticidal xin Complex TccC; YD Repeat-/RHS Repeat-Containing Protein; Insecticidal xin Complex-Like Protein; Insecticial xin Complex; Insecticidal xin Complex Protein Tccc; RhsA Protein
Number of amino acids: Translated: 942; Mature: 941
Protein sequence:
>942_residues MSVHINTPRMSVFDPRGLPVRTVDYCRDIEDGPVESRINRTLHDAAGRAMKQWDPRLWLSQADDRLTPANLTQVFALDAT VIRSDSVDAGTQIELKGLAAQTLFSWDSRQTRREIEHDNLLRPVAIFEEGTGVPRRCVERLTYGHPGSGDQSRNQFGQLI RHDHPAGSVLFTAFAIIGACTEDTRHFTLELLAPDWPEREADRLRLLEPGVGATSRWRHGALGDVLQQTDARDNRHTFEL TVDGRLRERRLQLKDEPEQTLVTDIRYNAQGSVTRETAGNGVQTTRTYRPEDGRLLDRRTEDADGGVLQHLMYGYDSTGN VLSIEDRALPTRYFANQRIEPVSRFFYDSLYRLTKACGWEAGTASQGPQSMGRVDPAAISNYQQTYKYDADGNLCELIHL GPQDHGRKLRPASYSNRSLPYKVTPPTDAQIEAAYDRRGNLLQLEPGWLLSWNLRNQLQSVSPVERVSGINDSETYLYDG SSQRVRKIRSLLTNARTLVADVRYLPGLELRTDNGTGERLQVITADGIRVLRWESPPPWGVNIQYRYQHVDHLGSVSLET ADDGAMISRETFHPFGTSAWQDGEFSYKYIRYSGKERDATGLDYFDLRYYIPWLQHWLNPDPKGMIDGLNLYCMVANSPV TFFDSDGGGKTEAAELNNSVDKQQALLSAVSSAAANTRNSIMNHLYARQRFQALGRRIITQLGSSAFSAGASAAGSAAGG GIGGLLGPGGAKLGAAAGEKAASMAADRLVSKVVDAYQLDRAINFKGNEMNPKAFIESVEPKKRPGLATLGFELAASDPR TPEGRARLARVVVDKAIDKVGGKLGSEAPGFIRTGIEFYHASQGLDAETLSEAHEHTLAVIDMLEFRTQAIKDEVAVSDD ATAEVFEKVSELSAQTPVVVQALNRNQDFIALVAPTPYAGKRHSLKRGAGAKSSPSRQQSFG
Sequences:
>Translated_942_residues MSVHINTPRMSVFDPRGLPVRTVDYCRDIEDGPVESRINRTLHDAAGRAMKQWDPRLWLSQADDRLTPANLTQVFALDAT VIRSDSVDAGTQIELKGLAAQTLFSWDSRQTRREIEHDNLLRPVAIFEEGTGVPRRCVERLTYGHPGSGDQSRNQFGQLI RHDHPAGSVLFTAFAIIGACTEDTRHFTLELLAPDWPEREADRLRLLEPGVGATSRWRHGALGDVLQQTDARDNRHTFEL TVDGRLRERRLQLKDEPEQTLVTDIRYNAQGSVTRETAGNGVQTTRTYRPEDGRLLDRRTEDADGGVLQHLMYGYDSTGN VLSIEDRALPTRYFANQRIEPVSRFFYDSLYRLTKACGWEAGTASQGPQSMGRVDPAAISNYQQTYKYDADGNLCELIHL GPQDHGRKLRPASYSNRSLPYKVTPPTDAQIEAAYDRRGNLLQLEPGWLLSWNLRNQLQSVSPVERVSGINDSETYLYDG SSQRVRKIRSLLTNARTLVADVRYLPGLELRTDNGTGERLQVITADGIRVLRWESPPPWGVNIQYRYQHVDHLGSVSLET ADDGAMISRETFHPFGTSAWQDGEFSYKYIRYSGKERDATGLDYFDLRYYIPWLQHWLNPDPKGMIDGLNLYCMVANSPV TFFDSDGGGKTEAAELNNSVDKQQALLSAVSSAAANTRNSIMNHLYARQRFQALGRRIITQLGSSAFSAGASAAGSAAGG GIGGLLGPGGAKLGAAAGEKAASMAADRLVSKVVDAYQLDRAINFKGNEMNPKAFIESVEPKKRPGLATLGFELAASDPR TPEGRARLARVVVDKAIDKVGGKLGSEAPGFIRTGIEFYHASQGLDAETLSEAHEHTLAVIDMLEFRTQAIKDEVAVSDD ATAEVFEKVSELSAQTPVVVQALNRNQDFIALVAPTPYAGKRHSLKRGAGAKSSPSRQQSFG >Mature_941_residues SVHINTPRMSVFDPRGLPVRTVDYCRDIEDGPVESRINRTLHDAAGRAMKQWDPRLWLSQADDRLTPANLTQVFALDATV IRSDSVDAGTQIELKGLAAQTLFSWDSRQTRREIEHDNLLRPVAIFEEGTGVPRRCVERLTYGHPGSGDQSRNQFGQLIR HDHPAGSVLFTAFAIIGACTEDTRHFTLELLAPDWPEREADRLRLLEPGVGATSRWRHGALGDVLQQTDARDNRHTFELT VDGRLRERRLQLKDEPEQTLVTDIRYNAQGSVTRETAGNGVQTTRTYRPEDGRLLDRRTEDADGGVLQHLMYGYDSTGNV LSIEDRALPTRYFANQRIEPVSRFFYDSLYRLTKACGWEAGTASQGPQSMGRVDPAAISNYQQTYKYDADGNLCELIHLG PQDHGRKLRPASYSNRSLPYKVTPPTDAQIEAAYDRRGNLLQLEPGWLLSWNLRNQLQSVSPVERVSGINDSETYLYDGS SQRVRKIRSLLTNARTLVADVRYLPGLELRTDNGTGERLQVITADGIRVLRWESPPPWGVNIQYRYQHVDHLGSVSLETA DDGAMISRETFHPFGTSAWQDGEFSYKYIRYSGKERDATGLDYFDLRYYIPWLQHWLNPDPKGMIDGLNLYCMVANSPVT FFDSDGGGKTEAAELNNSVDKQQALLSAVSSAAANTRNSIMNHLYARQRFQALGRRIITQLGSSAFSAGASAAGSAAGGG IGGLLGPGGAKLGAAAGEKAASMAADRLVSKVVDAYQLDRAINFKGNEMNPKAFIESVEPKKRPGLATLGFELAASDPRT PEGRARLARVVVDKAIDKVGGKLGSEAPGFIRTGIEFYHASQGLDAETLSEAHEHTLAVIDMLEFRTQAIKDEVAVSDDA TAEVFEKVSELSAQTPVVVQALNRNQDFIALVAPTPYAGKRHSLKRGAGAKSSPSRQQSFG
Specific function: Unknown
COG id: COG3209
COG function: function code M; Rhs family protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 104124; Mature: 103992
Theoretical pI: Translated: 6.72; Mature: 6.72
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSVHINTPRMSVFDPRGLPVRTVDYCRDIEDGPVESRINRTLHDAAGRAMKQWDPRLWLS CEEEECCCCCEEECCCCCCEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH QADDRLTPANLTQVFALDATVIRSDSVDAGTQIELKGLAAQTLFSWDSRQTRREIEHDNL CCCCCCCCCCHHHHEEECHHEEECCCCCCCCEEEEECHHHHHHHHCCCHHHHHHHHHCCC LRPVAIFEEGTGVPRRCVERLTYGHPGSGDQSRNQFGQLIRHDHPAGSVLFTAFAIIGAC CCCEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC TEDTRHFTLELLAPDWPEREADRLRLLEPGVGATSRWRHGALGDVLQQTDARDNRHTFEL CCCCCEEEEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEE TVDGRLRERRLQLKDEPEQTLVTDIRYNAQGSVTRETAGNGVQTTRTYRPEDGRLLDRRT EECCHHHHHHCCCCCCCHHHHEEHEEECCCCCEEHHCCCCCCCCCEEECCCCCCCCCCCC EDADGGVLQHLMYGYDSTGNVLSIEDRALPTRYFANQRIEPVSRFFYDSLYRLTKACGWE CCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC AGTASQGPQSMGRVDPAAISNYQQTYKYDADGNLCELIHLGPQDHGRKLRPASYSNRSLP CCCCCCCCHHHCCCCHHHHHCHHHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC YKVTPPTDAQIEAAYDRRGNLLQLEPGWLLSWNLRNQLQSVSPVERVSGINDSETYLYDG EEECCCCCCEEEEHHCCCCCEEEECCCEEEEECHHHHHHHCCHHHHHCCCCCCCCEEECC SSQRVRKIRSLLTNARTLVADVRYLPGLELRTDNGTGERLQVITADGIRVLRWESPPPWG CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCEEEEEECCCCCCC VNIQYRYQHVDHLGSVSLETADDGAMISRETFHPFGTSAWQDGEFSYKYIRYSGKERDAT CEEEEEEEHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC GLDYFDLRYYIPWLQHWLNPDPKGMIDGLNLYCMVANSPVTFFDSDGGGKTEAAELNNSV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHCHH DKQQALLSAVSSAAANTRNSIMNHLYARQRFQALGRRIITQLGSSAFSAGASAAGSAAGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC GIGGLLGPGGAKLGAAAGEKAASMAADRLVSKVVDAYQLDRAINFKGNEMNPKAFIESVE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHCCC PKKRPGLATLGFELAASDPRTPEGRARLARVVVDKAIDKVGGKLGSEAPGFIRTGIEFYH CCCCCCEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH ASQGLDAETLSEAHEHTLAVIDMLEFRTQAIKDEVAVSDDATAEVFEKVSELSAQTPVVV HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHH QALNRNQDFIALVAPTPYAGKRHSLKRGAGAKSSPSRQQSFG HHHCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCC >Mature Secondary Structure SVHINTPRMSVFDPRGLPVRTVDYCRDIEDGPVESRINRTLHDAAGRAMKQWDPRLWLS EEEECCCCCEEECCCCCCEEHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHH QADDRLTPANLTQVFALDATVIRSDSVDAGTQIELKGLAAQTLFSWDSRQTRREIEHDNL CCCCCCCCCCHHHHEEECHHEEECCCCCCCCEEEEECHHHHHHHHCCCHHHHHHHHHCCC LRPVAIFEEGTGVPRRCVERLTYGHPGSGDQSRNQFGQLIRHDHPAGSVLFTAFAIIGAC CCCEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHC TEDTRHFTLELLAPDWPEREADRLRLLEPGVGATSRWRHGALGDVLQQTDARDNRHTFEL CCCCCEEEEEEECCCCCCCCHHHEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEE TVDGRLRERRLQLKDEPEQTLVTDIRYNAQGSVTRETAGNGVQTTRTYRPEDGRLLDRRT EECCHHHHHHCCCCCCCHHHHEEHEEECCCCCEEHHCCCCCCCCCEEECCCCCCCCCCCC EDADGGVLQHLMYGYDSTGNVLSIEDRALPTRYFANQRIEPVSRFFYDSLYRLTKACGWE CCCCCHHHHHHHHCCCCCCCEEEECCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC AGTASQGPQSMGRVDPAAISNYQQTYKYDADGNLCELIHLGPQDHGRKLRPASYSNRSLP CCCCCCCCHHHCCCCHHHHHCHHHHEEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCC YKVTPPTDAQIEAAYDRRGNLLQLEPGWLLSWNLRNQLQSVSPVERVSGINDSETYLYDG EEECCCCCCEEEEHHCCCCCEEEECCCEEEEECHHHHHHHCCHHHHHCCCCCCCCEEECC SSQRVRKIRSLLTNARTLVADVRYLPGLELRTDNGTGERLQVITADGIRVLRWESPPPWG CHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCEEEEEEECCEEEEEECCCCCCC VNIQYRYQHVDHLGSVSLETADDGAMISRETFHPFGTSAWQDGEFSYKYIRYSGKERDAT CEEEEEEEHHHCCCCEEEEECCCCCEEECCCCCCCCCCCCCCCCCEEEEEEECCCCCCCC GLDYFDLRYYIPWLQHWLNPDPKGMIDGLNLYCMVANSPVTFFDSDGGGKTEAAELNNSV CCCHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEECCCEEEEECCCCCCCHHHHHHCHH DKQQALLSAVSSAAANTRNSIMNHLYARQRFQALGRRIITQLGSSAFSAGASAAGSAAGG HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCC GIGGLLGPGGAKLGAAAGEKAASMAADRLVSKVVDAYQLDRAINFKGNEMNPKAFIESVE CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCHHHHHHCCC PKKRPGLATLGFELAASDPRTPEGRARLARVVVDKAIDKVGGKLGSEAPGFIRTGIEFYH CCCCCCEEEECEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH ASQGLDAETLSEAHEHTLAVIDMLEFRTQAIKDEVAVSDDATAEVFEKVSELSAQTPVVV HCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHH QALNRNQDFIALVAPTPYAGKRHSLKRGAGAKSSPSRQQSFG HHHCCCCCEEEEECCCCCCCCCHHHHHCCCCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA