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The map label for this gene is algL [H]

Identifier: 77457180

GI number: 77457180

Start: 1109762

End: 1110886

Strand: Reverse

Name: algL [H]

Synonym: Pfl01_0953

Alternate gene names: 77457180

Gene position: 1110886-1109762 (Counterclockwise)

Preceding gene: 77457181

Following gene: 77457179

Centisome position: 17.25

GC content: 59.11

Gene sequence:

>1125_bases
ATGCGAAATCCGAAACTGAAAACTCTTTTGGCGCCGACACTGCTCGGGCTGGCGATCTTCGCCGGCACCGCGCAGGCCGC
CGCACCACTGCGTCCGCCACAGGGCTATTTTGCGCCGGTGGATAAATTCAAGACCGGCGACAAGAGCGAAGGCTGCGATG
CAATGCCGACGCCCTACACCGGGCCGCTGCAATTTCGCAGCAAATACGAAGGCTCGGACAAGGCTCGCGCGACGCTGAAC
GTGCAGTCGGAAAAAGCCTTTCGCGACACCACCAAAGACATCACCACCCTGGAGCGCGGCACCGCCAAACGGGTGATGCA
GTTCATGCGCGACGGCCGTCCGGAACAACTGGATTGCACGCTGAATTGGTTGACCGCCTGGGCCAAGGCCGATGCGTTGA
TGTCGAAAGACTTCAACCACACCGGCAAGTCGATGCGTAAATGGGCGCTGGGCAGCATGGCCTCTTCGTACATTCGCCTG
AAGTTTTCCGACTCCCATCCGCTGGCCCAGCACCAGCAGGAAGCCCAGGTGATCGAAGCCTGGTTCAGCAAAATGGCTGA
TCAGGTGGTCAGCGATTGGGACAACCTGCCGCTGGAAAAAACCAATAACCACTCGTACTGGGCAGCCTGGTCGGTGATGG
CGACATCTGTCGCGACCAACCGCCGCGACCTGTTCGATTGGGCAGTCAAGGAATACAAGGTCGGCGTCAATCAGGTCGAT
GCCGACGGTTTCCTGCCGAACGAACTCAAGCGCCAGCAACGCGCCCTCGCCTATCACAACTACGCCTTGCCGCCGCTGGC
GATGATCGCCAGTTTCGCCCAGGTCAACGGTGTGGATCTGCGTCAGGAAAACAACGGTGCGCTGAAACGTCTGGGTGATC
GGGTGCTGGCCGGGGTGAAAGACCCGGATCAGTTCGAGAAGAAGAACGGCAAAGAGCAGGACATGACCGACCTGAAACAG
GACATGAAATTCGCTTGGCTCGAACCGTTCTGCACGCTCTACACCTGTTCGCCGGATGTGATCGAGAAGAAGCACGGCAT
GCAGCCGTTCAAGACCTTCCGCCTCGGCGGCGACCTGACCAAGGTCTACGACCCGTCCCATGAAAAGGGCAACAAAGGTT
CCTGA

Upstream 100 bases:

>100_bases
CGGGCACCGCGCCACAGAAAGTCGAAGCGAAAATCTGCAAACGCAACGTATTCCCGGGCGCTGGGCAACAAACCGCTCAG
GTCGGGCAATGAGGTCTGCT

Downstream 100 bases:

>100_bases
CACTGACCGCTGATCGTTCCCACGCTCTGCGTGGGAATGCAGCCCGGGACGCTCCGCGTCCCATGCCGAAGCGGACGCAG
AGCGTCCATTGAGGCATTCC

Product: poly(beta-D-mannuronate) lyase

Products: NA

Alternate protein names: Poly(beta-D-mannuronate) lyase; Poly(mana) alginate lyase [H]

Number of amino acids: Translated: 374; Mature: 374

Protein sequence:

>374_residues
MRNPKLKTLLAPTLLGLAIFAGTAQAAAPLRPPQGYFAPVDKFKTGDKSEGCDAMPTPYTGPLQFRSKYEGSDKARATLN
VQSEKAFRDTTKDITTLERGTAKRVMQFMRDGRPEQLDCTLNWLTAWAKADALMSKDFNHTGKSMRKWALGSMASSYIRL
KFSDSHPLAQHQQEAQVIEAWFSKMADQVVSDWDNLPLEKTNNHSYWAAWSVMATSVATNRRDLFDWAVKEYKVGVNQVD
ADGFLPNELKRQQRALAYHNYALPPLAMIASFAQVNGVDLRQENNGALKRLGDRVLAGVKDPDQFEKKNGKEQDMTDLKQ
DMKFAWLEPFCTLYTCSPDVIEKKHGMQPFKTFRLGGDLTKVYDPSHEKGNKGS

Sequences:

>Translated_374_residues
MRNPKLKTLLAPTLLGLAIFAGTAQAAAPLRPPQGYFAPVDKFKTGDKSEGCDAMPTPYTGPLQFRSKYEGSDKARATLN
VQSEKAFRDTTKDITTLERGTAKRVMQFMRDGRPEQLDCTLNWLTAWAKADALMSKDFNHTGKSMRKWALGSMASSYIRL
KFSDSHPLAQHQQEAQVIEAWFSKMADQVVSDWDNLPLEKTNNHSYWAAWSVMATSVATNRRDLFDWAVKEYKVGVNQVD
ADGFLPNELKRQQRALAYHNYALPPLAMIASFAQVNGVDLRQENNGALKRLGDRVLAGVKDPDQFEKKNGKEQDMTDLKQ
DMKFAWLEPFCTLYTCSPDVIEKKHGMQPFKTFRLGGDLTKVYDPSHEKGNKGS
>Mature_374_residues
MRNPKLKTLLAPTLLGLAIFAGTAQAAAPLRPPQGYFAPVDKFKTGDKSEGCDAMPTPYTGPLQFRSKYEGSDKARATLN
VQSEKAFRDTTKDITTLERGTAKRVMQFMRDGRPEQLDCTLNWLTAWAKADALMSKDFNHTGKSMRKWALGSMASSYIRL
KFSDSHPLAQHQQEAQVIEAWFSKMADQVVSDWDNLPLEKTNNHSYWAAWSVMATSVATNRRDLFDWAVKEYKVGVNQVD
ADGFLPNELKRQQRALAYHNYALPPLAMIASFAQVNGVDLRQENNGALKRLGDRVLAGVKDPDQFEKKNGKEQDMTDLKQ
DMKFAWLEPFCTLYTCSPDVIEKKHGMQPFKTFRLGGDLTKVYDPSHEKGNKGS

Specific function: Depolymerizes alginate by cleaving the beta-1,4 glycosidic bond [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the polysaccharide lyase 5 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022859
- InterPro:   IPR008397
- InterPro:   IPR008929 [H]

Pfam domain/function: NA

EC number: =4.2.2.3 [H]

Molecular weight: Translated: 42113; Mature: 42113

Theoretical pI: Translated: 9.49; Mature: 9.49

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNPKLKTLLAPTLLGLAIFAGTAQAAAPLRPPQGYFAPVDKFKTGDKSEGCDAMPTPYT
CCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
GPLQFRSKYEGSDKARATLNVQSEKAFRDTTKDITTLERGTAKRVMQFMRDGRPEQLDCT
CCHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHH
LNWLTAWAKADALMSKDFNHTGKSMRKWALGSMASSYIRLKFSDSHPLAQHQQEAQVIEA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
WFSKMADQVVSDWDNLPLEKTNNHSYWAAWSVMATSVATNRRDLFDWAVKEYKVGVNQVD
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEC
ADGFLPNELKRQQRALAYHNYALPPLAMIASFAQVNGVDLRQENNGALKRLGDRVLAGVK
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCC
DPDQFEKKNGKEQDMTDLKQDMKFAWLEPFCTLYTCSPDVIEKKHGMQPFKTFRLGGDLT
CHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHEEEECCHHHHHHHCCCCHHHHHHCCCCHH
KVYDPSHEKGNKGS
HHCCCCCCCCCCCC
>Mature Secondary Structure
MRNPKLKTLLAPTLLGLAIFAGTAQAAAPLRPPQGYFAPVDKFKTGDKSEGCDAMPTPYT
CCCCCHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCC
GPLQFRSKYEGSDKARATLNVQSEKAFRDTTKDITTLERGTAKRVMQFMRDGRPEQLDCT
CCHHHHHCCCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEHH
LNWLTAWAKADALMSKDFNHTGKSMRKWALGSMASSYIRLKFSDSHPLAQHQQEAQVIEA
HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHH
WFSKMADQVVSDWDNLPLEKTNNHSYWAAWSVMATSVATNRRDLFDWAVKEYKVGVNQVD
HHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCEEC
ADGFLPNELKRQQRALAYHNYALPPLAMIASFAQVNGVDLRQENNGALKRLGDRVLAGVK
CCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHCCCC
DPDQFEKKNGKEQDMTDLKQDMKFAWLEPFCTLYTCSPDVIEKKHGMQPFKTFRLGGDLT
CHHHHHHCCCCHHHHHHHHHHHHHHHHCCHHEEEECCHHHHHHHCCCCHHHHHHCCCCHH
KVYDPSHEKGNKGS
HHCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA