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The map label for this gene is fecI [C]

Identifier: 77457156

GI number: 77457156

Start: 1079401

End: 1079967

Strand: Direct

Name: fecI [C]

Synonym: Pfl01_0929

Alternate gene names: 77457156

Gene position: 1079401-1079967 (Clockwise)

Preceding gene: 77457155

Following gene: 77457157

Centisome position: 16.77

GC content: 65.43

Gene sequence:

>567_bases
ATGCTGATCGGCCATCCTCCCGAACACCGTGACGACGAGCCCCATGGCGCCCGTGCGCATTTTCTTCAGGTGTTCCTGTC
CCAGCGTTCGCAGATGGAAGCGCTGGTGAGCCGGCGCGTCGGTTGCCGGGCGACCGCGGCGGATCTGGTGCAGGACCTGT
TCCTGCGTTTCTGGCGTCGGCCGCTGGTGCAGGTCGAAGAACTCAGCACTTATCTTTTGCGCTGCGCCGGCAATATCGCC
ATCGACCATTTGCGCAGCGAAGGCGCGCGAGTTCGAGTCACCGAAGGCTGGCAACCGGACGAGCCGGACAGCAGCGCCAG
CGAACCGCAGGCGGCGCTCGAAGCGGGCAACGATTTGCGCCACGTCGAGGCGGCGTTGCGCGCGCTGCCCGAGCGCACGC
GGCAGATCTTTTTGCTCAATCGCATCCACGGGCGCAAGTACGCCGAGATCGCCAAGGCCATGGGCCTGTCCCAAAGCGCT
GTGGAAAAACATATGATGCGCGCCCTCGAGGCCTGCAAGGCCAGCCTGCGCGAACCCGCGCCACGCATGCCAGGGAAAGC
ACCGTGA

Upstream 100 bases:

>100_bases
TTGCTGGTGCTGCTGATGCCGTACCGACCAAAACTGGCATTGTCGCTGGCGGCGTTGAGCCTGTTGGCTGCGCCCGTCGC
CGCATGGGCGTGGTGGTGAC

Downstream 100 bases:

>100_bases
ACAACACCGAACGCGTCGTACCGACGCCCGCGCAGGAACAGGCCGCTTTTGCCTGGCTGAGCCTGCTGCACGACCGCCCG
AGCACCGGTGATCAACTGAC

Product: sigma-24 (FecI)

Products: NA

Alternate protein names: ECF Subfamily RNA Polymerase Sigma-24 Factor; ECF Subfamily RNA Polymerase Sigma Factor; Sigma-; Extracytoplasmic-Function Sigma-70 Factor; RNA Polymerase Sigma Factor FecI; RNA Polymerase Sigma Factor; ECF Subfamily RNA Polymerase Sigma-70 Factor; RNA Polymerase Sigma-24 Subunit Ecf Subfamily; RNA Polymerase Sigma Factor Sigma-70 Family; RNA Polymerase ECF-Subfamily Sigma-70 Factor; RNA Polymerase Sigma Factor FecI Family; RNA Polymerase ECF-Type Sigma Factor; RNA Polymerase Sigma-70 Family Protein; ECF Family RNA Polymerase Sigma Factor; Sigma-70 Family RNA Polymerase Sigma Factor; RNA Polymerase Sigma-70 Factor ECF Subfamily; ECF Sigma Factor; RNA Polymerase Sigma-24 Factor; ECF Sigma Factor FecI Family; ECF Family Sigma Factor; Heme Uptake RNA Polymerase Sigma-70 Factor; RNA Polymerase ECF-Type Sigma Factor FecI; Fec I Like Protein; Transcriptional Regulator LuxR Family; RNA Polymerase Sigma-70 Factor; ECF-Sigma Factor; RNA Polymerase Sigma Factor Sigma-70 Family Protein; Iron-Regulated Sigma Factor/Transcriptional Regulator; Anti-FecI Sigma Factor FecR; ECF Subfamily RNA Polymerase Sigma-24 Subunit; FecI-Like Protein; Extracytoplasmic Function Sigma Factor Protein; RNA Polymerase ECF-Family Sigma Factor; Extracytoplasmic-Function Sigma-70 Factor PvdS

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MLIGHPPEHRDDEPHGARAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQVEELSTYLLRCAGNIA
IDHLRSEGARVRVTEGWQPDEPDSSASEPQAALEAGNDLRHVEAALRALPERTRQIFLLNRIHGRKYAEIAKAMGLSQSA
VEKHMMRALEACKASLREPAPRMPGKAP

Sequences:

>Translated_188_residues
MLIGHPPEHRDDEPHGARAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQVEELSTYLLRCAGNIA
IDHLRSEGARVRVTEGWQPDEPDSSASEPQAALEAGNDLRHVEAALRALPERTRQIFLLNRIHGRKYAEIAKAMGLSQSA
VEKHMMRALEACKASLREPAPRMPGKAP
>Mature_188_residues
MLIGHPPEHRDDEPHGARAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRRPLVQVEELSTYLLRCAGNIA
IDHLRSEGARVRVTEGWQPDEPDSSASEPQAALEAGNDLRHVEAALRALPERTRQIFLLNRIHGRKYAEIAKAMGLSQSA
VEKHMMRALEACKASLREPAPRMPGKAP

Specific function: Sigma Factors Are Initiation Factors That Promote The Attachment Of RNA Polymerase To Specific Initiation Sites And Are Then Released. This Sigma Factor Regulates The Fec Genes For Iron Dicitrate Transport (Probable). [C]

COG id: COG1595

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 21128; Mature: 21128

Theoretical pI: Translated: 8.91; Mature: 8.91

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLIGHPPEHRDDEPHGARAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
PLVQVEELSTYLLRCAGNIAIDHLRSEGARVRVTEGWQPDEPDSSASEPQAALEAGNDLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCHHH
HVEAALRALPERTRQIFLLNRIHGRKYAEIAKAMGLSQSAVEKHMMRALEACKASLREPA
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PRMPGKAP
CCCCCCCC
>Mature Secondary Structure
MLIGHPPEHRDDEPHGARAHFLQVFLSQRSQMEALVSRRVGCRATAADLVQDLFLRFWRR
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
PLVQVEELSTYLLRCAGNIAIDHLRSEGARVRVTEGWQPDEPDSSASEPQAALEAGNDLR
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCHHHHHHCCCHHH
HVEAALRALPERTRQIFLLNRIHGRKYAEIAKAMGLSQSAVEKHMMRALEACKASLREPA
HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
PRMPGKAP
CCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA