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The map label for this gene is yddU [C]

Identifier: 77457123

GI number: 77457123

Start: 1040666

End: 1041142

Strand: Reverse

Name: yddU [C]

Synonym: Pfl01_0896

Alternate gene names: 77457123

Gene position: 1041142-1040666 (Counterclockwise)

Preceding gene: 77457125

Following gene: 77457122

Centisome position: 16.17

GC content: 56.18

Gene sequence:

>477_bases
ATGATCAATGCCAGTCTCATGCAAATGGTGATCAACGCGTCGAACGATGGAATCGTGGTGGCCGAACGGGAGGGTAAGGA
CGACAACATCCTGATTTACGTGAACCCGGCCTTCGAACGCCTGACCGGCTACACCAGCGAAGAAATCCTTTATCAGGATT
GCCGTTTCCTGCAGTCGGGCGATCGCGATCAGGAGAACCTGGCCCTGATTCGCGATGCTCTGCGCAACAACGGCTCGTGC
CGGGAAATTCTGCGTAACTACCGCAAGGACGGCACGCCGTTCTGGAACGAGCTGTCTCTTTCAACGGTTAAAAATGTGGA
CGACGGGCAGACCTACTTCGTCGGCGTGCAAAAGGACGTCACCGTTCAGGTCAAGGCGCAGCAGCGGGTTGCGCAACTGG
AAGCCCAGGTGGCGGCACTGGAAGCAGAACTTGCAGCCTTGAAAGCGACGAACGGCGCAAACAAAACTGCGAACTAA

Upstream 100 bases:

>100_bases
TCATGTTGCGATTGGCTCTCGGTAAGCGCTGATGGCCAGTAGACAGCGCCGGGCGATCTTCTAGAATGCCTTCGGTCGAT
AACCTTGAAAGGATTCAAAG

Downstream 100 bases:

>100_bases
GTGTCAGTAACTACAATCACCAATGACTTTGTAATTATTCATTTCGAGTTAACCATGCAGCGCGACGCCCTCCTCACTCA
GGATGAGCTGGATTTCATCC

Product: sensor protein

Products: NA

Alternate protein names: Phototropin homolog [H]

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MINASLMQMVINASNDGIVVAEREGKDDNILIYVNPAFERLTGYTSEEILYQDCRFLQSGDRDQENLALIRDALRNNGSC
REILRNYRKDGTPFWNELSLSTVKNVDDGQTYFVGVQKDVTVQVKAQQRVAQLEAQVAALEAELAALKATNGANKTAN

Sequences:

>Translated_158_residues
MINASLMQMVINASNDGIVVAEREGKDDNILIYVNPAFERLTGYTSEEILYQDCRFLQSGDRDQENLALIRDALRNNGSC
REILRNYRKDGTPFWNELSLSTVKNVDDGQTYFVGVQKDVTVQVKAQQRVAQLEAQVAALEAELAALKATNGANKTAN
>Mature_158_residues
MINASLMQMVINASNDGIVVAEREGKDDNILIYVNPAFERLTGYTSEEILYQDCRFLQSGDRDQENLALIRDALRNNGSC
REILRNYRKDGTPFWNELSLSTVKNVDDGQTYFVGVQKDVTVQVKAQQRVAQLEAQVAALEAELAALKATNGANKTAN

Specific function: Exhibits the same spectroscopical features and blue- light induced photochemistry as plants phototropins, with the reversible formation of a blue-shifted photoproduct, assigned to an FMN-cysteine thiol adduct. Positive regulator in the activation of the g

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR002645 [H]

Pfam domain/function: PF00989 PAS; PF01740 STAS [H]

EC number: NA

Molecular weight: Translated: 17587; Mature: 17587

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: PS50112 PAS ; PS50113 PAC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MINASLMQMVINASNDGIVVAEREGKDDNILIYVNPAFERLTGYTSEEILYQDCRFLQSG
CCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHCC
DRDQENLALIRDALRNNGSCREILRNYRKDGTPFWNELSLSTVKNVDDGQTYFVGVQKDV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHCCHHHHCCCCCCCEEEEEECCCE
TVQVKAQQRVAQLEAQVAALEAELAALKATNGANKTAN
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MINASLMQMVINASNDGIVVAEREGKDDNILIYVNPAFERLTGYTSEEILYQDCRFLQSG
CCCHHHHHHHHCCCCCCEEEEECCCCCCCEEEEECCHHHHHCCCCHHHHHHHHHHHHHCC
DRDQENLALIRDALRNNGSCREILRNYRKDGTPFWNELSLSTVKNVDDGQTYFVGVQKDV
CCCHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCCCHHCCHHHHCCCCCCCEEEEEECCCE
TVQVKAQQRVAQLEAQVAALEAELAALKATNGANKTAN
EEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]