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The map label for this gene is opuBB [H]

Identifier: 77457031

GI number: 77457031

Start: 949156

End: 949809

Strand: Reverse

Name: opuBB [H]

Synonym: Pfl01_0804

Alternate gene names: 77457031

Gene position: 949809-949156 (Counterclockwise)

Preceding gene: 77457032

Following gene: 77457030

Centisome position: 14.75

GC content: 63.76

Gene sequence:

>654_bases
ATGGAATTTTTGAACGCCTTTTCCCACCTCGACTGGCAGCAGGTGATGCACCTGACCTGGCAGCACATCACCCTGGTCGG
CATCGCCGTCAGCCTGGCGATTCTCATCGGCGTGCCGCTGGGCATCCTGATGACACGCTTCCCGAGCCTCGCCGGTCCCT
TGCAGGCCAGCGCCACGGTGCTGCTGACCGTGCCGTCGATTGCCCTGTTCGGCCTGCTGCTGCCGTTCTACTCGAAATTC
GGCCAGGGCCTCGGCCCGATGCCGGCGATCACCGCCGTGTTCCTTTATTCATTGCTGCCGATCATGCGCAACACCTACCT
CGCCCTGACCGGCGTCGAGCCGGGCATCCGTGAAGCCGCACGCGGCATCGGCATGACCTTCGGCCAGCGCCTGCGCATGG
TCGAGTTGCCGATCGCCGTGCCGGTGATCCTCGCCGGCGTGCGCACTGCGGTGGTGATGAACATCGGTGTGATGACCATC
GCCGCGACCATCGGCGCCGGTGGTCTCGGCGTGCTGATCCTCGCCTCCATCAGCCGCAGCGACATGTCGATGCTCATCGT
CGGCGCGCTGCTGGTCAGTCTTCTGGCGATCTTCGCCGACCTCATTTTGCAGTGGCTGCAACGTTCGCTGACTCCAAAAG
GACTCCTCAAATGA

Upstream 100 bases:

>100_bases
CGCCAGCTCAACGCGCGGGTCGATGTCGATCACGAAAGCCCGTCGAAAGTCGCTGCCGATTTCCTGCGCCAGCATCCACT
GAACTAAAGGAGGAAAAGTC

Downstream 100 bases:

>100_bases
TCGAACTTCAAAACCTCAGCAAGACCTTCCAAAGCAACGGCAAAGATGTGAAAGCCGTGGACTCGGTAAGCCTGACCGTC
AATGAAGGCGAAATCTGTGT

Product: binding-protein dependent transport system inner membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MEFLNAFSHLDWQQVMHLTWQHITLVGIAVSLAILIGVPLGILMTRFPSLAGPLQASATVLLTVPSIALFGLLLPFYSKF
GQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTI
AATIGAGGLGVLILASISRSDMSMLIVGALLVSLLAIFADLILQWLQRSLTPKGLLK

Sequences:

>Translated_217_residues
MEFLNAFSHLDWQQVMHLTWQHITLVGIAVSLAILIGVPLGILMTRFPSLAGPLQASATVLLTVPSIALFGLLLPFYSKF
GQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTI
AATIGAGGLGVLILASISRSDMSMLIVGALLVSLLAIFADLILQWLQRSLTPKGLLK
>Mature_217_residues
MEFLNAFSHLDWQQVMHLTWQHITLVGIAVSLAILIGVPLGILMTRFPSLAGPLQASATVLLTVPSIALFGLLLPFYSKF
GQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAARGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTI
AATIGAGGLGVLILASISRSDMSMLIVGALLVSLLAIFADLILQWLQRSLTPKGLLK

Specific function: Involved in a high affinity multicomponent binding- protein-dependent transport system for choline; probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1174

COG function: function code E; ABC-type proline/glycine betaine transport systems, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788449, Length=192, Percent_Identity=42.7083333333333, Blast_Score=126, Evalue=1e-30,
Organism=Escherichia coli, GI1788451, Length=191, Percent_Identity=38.2198952879581, Blast_Score=111, Evalue=4e-26,
Organism=Escherichia coli, GI1789033, Length=183, Percent_Identity=33.879781420765, Blast_Score=91, Evalue=8e-20,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23100; Mature: 23100

Theoretical pI: Translated: 10.75; Mature: 10.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.1 %Met     (Translated Protein)
5.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.1 %Met     (Mature Protein)
5.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEFLNAFSHLDWQQVMHLTWQHITLVGIAVSLAILIGVPLGILMTRFPSLAGPLQASATV
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHCCEE
LLTVPSIALFGLLLPFYSKFGQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAA
EEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
RGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHH
DMSMLIVGALLVSLLAIFADLILQWLQRSLTPKGLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MEFLNAFSHLDWQQVMHLTWQHITLVGIAVSLAILIGVPLGILMTRFPSLAGPLQASATV
CCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCCHHHCCEE
LLTVPSIALFGLLLPFYSKFGQGLGPMPAITAVFLYSLLPIMRNTYLALTGVEPGIREAA
EEEHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHH
RGIGMTFGQRLRMVELPIAVPVILAGVRTAVVMNIGVMTIAATIGAGGLGVLILASISRS
HHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCHH
DMSMLIVGALLVSLLAIFADLILQWLQRSLTPKGLLK
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7592481; 10216873; 9384377 [H]