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The map label for this gene is yjjV [H]

Identifier: 77457018

GI number: 77457018

Start: 928720

End: 929496

Strand: Reverse

Name: yjjV [H]

Synonym: Pfl01_0791

Alternate gene names: 77457018

Gene position: 929496-928720 (Counterclockwise)

Preceding gene: 77457019

Following gene: 77457012

Centisome position: 14.44

GC content: 62.55

Gene sequence:

>777_bases
GTGGAGCTGATCGACAGCCACACCCATCTGGACTTTCCCGACTTCGACGCCGACCGCGCGGCGCTGCTGAGCGAAAGCCG
CGCCCTCGGGGTGCGGCGAATGGTGGTGCTTGGGGTCTACGAGGGTAACTGGCAACGGGTGTGGGATCTGGTGCAAAGCG
ACGCCGATCTGTACGCAGCGTTCGGATTGCACCCGGTCTATCTCGATCAGCATCGGCCTGAAGACCTGCTTGCTCTAGGT
GACTGGCTGACACGGCTAAAAGGTCATCGGCAGCTGTGCGCGGTAGGCGAAATCGGCCTGGATTACTTCATCGAAACCCT
CGACCGCGAACGCCAGCAAGTGCTGTTCGAAACGCAGTTGCAACTGGCGGCGGATTTCGAATTACCGGCGCTGATCCACG
TACGGCGCAGCCATGCGGCGGTGATCGCCACGCTCAAGCGCTTCAAGCTCAAACGCGCCGGCATCATCCACGCCTTTGCC
GGCAGCCGTGAAGAAGCGCGGGAATACATCAAGCTCGGTTTCAAACTTGGCCTCGGGGGCGCACCGACCTGGCCGCAGGC
GTTGCGCATGCACCGGGTGCTGGCCGACTTGCCGCTGGATTCGGTGGTGCTGGAAACCGACTCACCGGACATGGCGCCCG
CCATGTACCCCGGCATTCGCAATACGCCAGCGCATCTGCCGGCGATCTGCGCCTCACTGGCCACTTTGATGAACATCAGT
GCGCAACAACTCGCTGCCGCCAGTACCGCCAACAGCTGCGAGGTGTTCGGCTGGTAG

Upstream 100 bases:

>100_bases
GCTGGAACTGGCGTTGGCGGCGGTCGAACAATCGGACTACCAGCCTGGCGTGCAGGCCATTGCCCGGACCTTCAAGCAGC
GTATTCACCGGGACTGAGCC

Downstream 100 bases:

>100_bases
TCAGTCGGCGTGGGCCTTGGCCGCGTCGAGAATCAGCGTCAGGTGCTGGCGCTGCCGGGCATAACGAATCACCGCGAAGT
ACACGAAAATCGCGATCAGC

Product: TatD-like deoxyribonuclease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 258; Mature: 258

Protein sequence:

>258_residues
MELIDSHTHLDFPDFDADRAALLSESRALGVRRMVVLGVYEGNWQRVWDLVQSDADLYAAFGLHPVYLDQHRPEDLLALG
DWLTRLKGHRQLCAVGEIGLDYFIETLDRERQQVLFETQLQLAADFELPALIHVRRSHAAVIATLKRFKLKRAGIIHAFA
GSREEAREYIKLGFKLGLGGAPTWPQALRMHRVLADLPLDSVVLETDSPDMAPAMYPGIRNTPAHLPAICASLATLMNIS
AQQLAAASTANSCEVFGW

Sequences:

>Translated_258_residues
MELIDSHTHLDFPDFDADRAALLSESRALGVRRMVVLGVYEGNWQRVWDLVQSDADLYAAFGLHPVYLDQHRPEDLLALG
DWLTRLKGHRQLCAVGEIGLDYFIETLDRERQQVLFETQLQLAADFELPALIHVRRSHAAVIATLKRFKLKRAGIIHAFA
GSREEAREYIKLGFKLGLGGAPTWPQALRMHRVLADLPLDSVVLETDSPDMAPAMYPGIRNTPAHLPAICASLATLMNIS
AQQLAAASTANSCEVFGW
>Mature_258_residues
MELIDSHTHLDFPDFDADRAALLSESRALGVRRMVVLGVYEGNWQRVWDLVQSDADLYAAFGLHPVYLDQHRPEDLLALG
DWLTRLKGHRQLCAVGEIGLDYFIETLDRERQQVLFETQLQLAADFELPALIHVRRSHAAVIATLKRFKLKRAGIIHAFA
GSREEAREYIKLGFKLGLGGAPTWPQALRMHRVLADLPLDSVVLETDSPDMAPAMYPGIRNTPAHLPAICASLATLMNIS
AQQLAAASTANSCEVFGW

Specific function: Unknown

COG id: COG0084

COG function: function code L; Mg-dependent DNase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the tatD DNase family [H]

Homologues:

Organism=Homo sapiens, GI110349730, Length=263, Percent_Identity=27.3764258555133, Blast_Score=96, Evalue=2e-20,
Organism=Homo sapiens, GI110349734, Length=265, Percent_Identity=27.5471698113208, Blast_Score=94, Evalue=1e-19,
Organism=Homo sapiens, GI226061853, Length=268, Percent_Identity=26.865671641791, Blast_Score=92, Evalue=5e-19,
Organism=Homo sapiens, GI226061614, Length=259, Percent_Identity=26.2548262548263, Blast_Score=86, Evalue=3e-17,
Organism=Homo sapiens, GI14042943, Length=216, Percent_Identity=26.8518518518519, Blast_Score=84, Evalue=1e-16,
Organism=Homo sapiens, GI225903439, Length=192, Percent_Identity=28.125, Blast_Score=79, Evalue=3e-15,
Organism=Homo sapiens, GI226061595, Length=231, Percent_Identity=27.7056277056277, Blast_Score=79, Evalue=6e-15,
Organism=Homo sapiens, GI225903424, Length=182, Percent_Identity=28.021978021978, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87082439, Length=255, Percent_Identity=39.2156862745098, Blast_Score=181, Evalue=4e-47,
Organism=Escherichia coli, GI1787342, Length=260, Percent_Identity=30, Blast_Score=124, Evalue=7e-30,
Organism=Escherichia coli, GI48994985, Length=264, Percent_Identity=27.6515151515151, Blast_Score=97, Evalue=1e-21,
Organism=Caenorhabditis elegans, GI17559024, Length=289, Percent_Identity=26.2975778546713, Blast_Score=96, Evalue=2e-20,
Organism=Caenorhabditis elegans, GI71980746, Length=270, Percent_Identity=25.1851851851852, Blast_Score=93, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24648690, Length=286, Percent_Identity=27.2727272727273, Blast_Score=90, Evalue=2e-18,
Organism=Drosophila melanogaster, GI221330018, Length=298, Percent_Identity=25.1677852348993, Blast_Score=89, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24586117, Length=259, Percent_Identity=25.8687258687259, Blast_Score=89, Evalue=3e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR015992
- InterPro:   IPR001130
- InterPro:   IPR018228
- InterPro:   IPR012278 [H]

Pfam domain/function: PF01026 TatD_DNase [H]

EC number: 3.1.21.-

Molecular weight: Translated: 28748; Mature: 28748

Theoretical pI: Translated: 6.17; Mature: 6.17

Prosite motif: PS01137 TATD_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELIDSHTHLDFPDFDADRAALLSESRALGVRRMVVLGVYEGNWQRVWDLVQSDADLYAA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHCCCHHHHH
FGLHPVYLDQHRPEDLLALGDWLTRLKGHRQLCAVGEIGLDYFIETLDRERQQVLFETQL
HCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAADFELPALIHVRRSHAAVIATLKRFKLKRAGIIHAFAGSREEAREYIKLGFKLGLGG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCC
APTWPQALRMHRVLADLPLDSVVLETDSPDMAPAMYPGIRNTPAHLPAICASLATLMNIS
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCC
AQQLAAASTANSCEVFGW
HHHHHHHCCCCCCEECCC
>Mature Secondary Structure
MELIDSHTHLDFPDFDADRAALLSESRALGVRRMVVLGVYEGNWQRVWDLVQSDADLYAA
CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHEEEEEEEEECCCHHHHHHHHHCCCHHHHH
FGLHPVYLDQHRPEDLLALGDWLTRLKGHRQLCAVGEIGLDYFIETLDRERQQVLFETQL
HCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
QLAADFELPALIHVRRSHAAVIATLKRFKLKRAGIIHAFAGSREEAREYIKLGFKLGLGG
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCCCHHHHHHHHHHHHHCCCCC
APTWPQALRMHRVLADLPLDSVVLETDSPDMAPAMYPGIRNTPAHLPAICASLATLMNIS
CCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHCCC
AQQLAAASTANSCEVFGW
HHHHHHHCCCCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7610040; 9278503 [H]