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The map label for this gene is smpB

Identifier: 77456982

GI number: 77456982

Start: 888415

End: 888897

Strand: Reverse

Name: smpB

Synonym: Pfl01_0755

Alternate gene names: 77456982

Gene position: 888897-888415 (Counterclockwise)

Preceding gene: 77456986

Following gene: 77456980

Centisome position: 13.81

GC content: 58.59

Gene sequence:

>483_bases
ATGGCTAAACAGAAGAAACACCCAACAGGGACCATCGCGCAAAACAAAAAAGCGCGACACGATTACTTCATCGAGCACAA
GTTCGAGGCTGGTCTGGTCCTGGCCGGCTGGGAAGTAAAAAGTCTGCGGGCAAGCAAACTGCAACTGGTCGACAGTTACG
TGTTGCTCAAGGATGGCGAAGCCTGGTTGCTCGGCAGCCACATCACGCCTCTGATGACCGCCAGCACCCACGTCATTGCC
GACCCGGTGCGTACCCGCAAGTTGCTGCTCAACCGCCGCGAACTGGACAAGCTCGCCGCCGCCGTGCAGCAAAAGGGTTA
CGCCTGCGTGTGCCTGTCCTGGTACTGGAGCAAGCACATGGTCAAGTGCGAGATTGCTCTCGGCAAGGGCAAGAAGGAAT
ACGACAAGCGCGATACCGAACGCGAACGCGACGCCGGTCGCGAGTTGCAGCGTGCGGTGCGCAACAAGGGCAAGGAAGAC
TGA

Upstream 100 bases:

>100_bases
TTAGAAAAAGAGGCCGCATTGTCCGGGATTCACTCAACCTGCTCAAGCACGCAGCATCACCGTAGCCGACAGCCGTTTAT
CTCCATATAATGCCGCCCCT

Downstream 100 bases:

>100_bases
TTCCTCTGCCTGAATGACCGTTCCCGCGCCTGGCACGGGAGCGGTCTTTTTTACATCCCTTTGCGTCGCTCGGCGCGAGC
CATGCGCTGCACTTCCTGTC

Product: SsrA-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 160; Mature: 159

Protein sequence:

>160_residues
MAKQKKHPTGTIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKDGEAWLLGSHITPLMTASTHVIA
DPVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSKHMVKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGKED

Sequences:

>Translated_160_residues
MAKQKKHPTGTIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKDGEAWLLGSHITPLMTASTHVIA
DPVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSKHMVKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGKED
>Mature_159_residues
AKQKKHPTGTIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKDGEAWLLGSHITPLMTASTHVIAD
PVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSKHMVKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGKED

Specific function: Binds specifically to the ssrA RNA (tmRNA) and is required for stable association of ssrA with ribosomes

COG id: COG0691

COG function: function code O; tmRNA-binding protein

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpB family

Homologues:

Organism=Escherichia coli, GI1788973, Length=157, Percent_Identity=56.687898089172, Blast_Score=177, Evalue=2e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): SSRP_PSEPF (Q3KIA8)

Other databases:

- EMBL:   CP000094
- RefSeq:   YP_346487.1
- ProteinModelPortal:   Q3KIA8
- SMR:   Q3KIA8
- STRING:   Q3KIA8
- GeneID:   3715213
- GenomeReviews:   CP000094_GR
- KEGG:   pfo:Pfl01_0755
- eggNOG:   COG0691
- HOGENOM:   HBG293422
- OMA:   EKYEAGI
- ProtClustDB:   PRK05422
- BioCyc:   PFLU205922:PFL_0755-MONOMER
- GO:   GO:0005737
- GO:   GO:0006412
- HAMAP:   MF_00023
- InterPro:   IPR000037
- InterPro:   IPR020081
- Gene3D:   G3DSA:2.40.280.10
- ProDom:   PD004488
- TIGRFAMs:   TIGR00086

Pfam domain/function: PF01668 SmpB; SSF74982 SmpB

EC number: NA

Molecular weight: Translated: 18314; Mature: 18183

Theoretical pI: Translated: 10.31; Mature: 10.31

Prosite motif: PS01317 SSRP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.9 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKQKKHPTGTIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKDGE
CCCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHEEEEECCC
AWLLGSHITPLMTASTHVIADPVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSKHM
EEEECCCCCHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCE
VKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGKED
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKQKKHPTGTIAQNKKARHDYFIEHKFEAGLVLAGWEVKSLRASKLQLVDSYVLLKDGE
CCCCCCCCCCCCCCCCCCCCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHEEEEECCC
AWLLGSHITPLMTASTHVIADPVRTRKLLLNRRELDKLAAAVQQKGYACVCLSWYWSKHM
EEEECCCCCHHHHCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHCCCE
VKCEIALGKGKKEYDKRDTERERDAGRELQRAVRNKGKED
EEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA